Molecular dynamics simulation of the transmembrane subunit of BtuCD in the lipid bilayer  

作　　者：SUN TingGuang1,2,LIU Ming1,CHEN WeiZu1 & WANG CunXin1 1College of Life Science and Bioengineering,Beijing University of Technology,Beijing 100124,China 2Department of Biological and Chemical Engineering,Guangxi University of Technology,Liuzhou 545006,China 

出　　处：《Science China(Life Sciences)》2010年第5期620-630,共11页中国科学（生命科学英文版）

基　　金：supported by the National Natural Science Foundation of China (Grant Nos 20773006 and 30670497);the Beijing Natural Science Foun-dation (Grant Nos 7082006 and 5072002);the Specialized Research Fund for the Doctoral Program of Higher Education (Grant No 200800050003)

摘　　要：Based on the crystal structure of the vitamin B12 transporter protein of Escherichia coli(BtuCD) a system consisting of the BtuCD transmembrane domain(BtuC) and the palmitoyloleoyl phosphatidylcholine(POPC) lipid bilayer was constructed in silica,and a more-than-57-nanosecond molecular dynamics(MD) simulation was performed on it to reveal the intrinsic functional motions of BtuC.The results showed that a stable protein-lipid bilayer was obtained and the POPC lipid bilayer was able to adjust its thickness to match the embedded BtuC which underwent relatively complicated motions.These results may help to understand the mechanism of transmembrane substrate transport at the atomic level.Based on the crystal structure of the vitamin B12 transporter protein of Escherichia coli(BtuCD) a system consisting of the BtuCD transmembrane domain(BtuC) and the palmitoyloleoyl phosphatidylcholine(POPC) lipid bilayer was constructed in silica,and a more-than-57-nanosecond molecular dynamics(MD) simulation was performed on it to reveal the intrinsic functional motions of BtuC.The results showed that a stable protein-lipid bilayer was obtained and the POPC lipid bilayer was able to adjust its thickness to match the embedded BtuC which underwent relatively complicated motions.These results may help to understand the mechanism of transmembrane substrate transport at the atomic level.

关 键 词：BtuCD POPC FUNCTIONAL MOTION principal component analysis 

分 类 号：Q73[生物学—分子生物学]