系统发生分析软件PAUP和TreePuzzle使用方法介绍  

Introduction to Usage of Phylogenetic Analysis Softwares PAUP and TreePuzzle

作　　者：王勇[1] 陈克平[2] 姚勤[2] 

机构地区：[1]江苏大学食品与生物工程学院,江苏镇江212013 [2]江苏大学生命科学研究院,江苏镇江212013

出　　处：《安徽农业科学》2008年第2期818-821,829,共5页Journal of Anhui Agricultural Sciences

基　　金：国家自然科学基金资助项目(30370773)

摘　　要：系统发生分析被广泛应用于研究不同生物DNA、蛋白质序列的进化关系。PAUP和TreePuzzle是目前使用较多的系统发生分析软件,但其使用方法较为复杂,不易被初学者掌握。从序列信息模块、序列参数模块、运算命令模块3个方面介绍了PAUP软件的使用方法,同时也对TreePuzzle软件的使用和进化树的编辑与注释方法做了简单介绍。Phylogenetic analysis has been used to study the evolutionary relationship among DNA and protein sequences of various organisms extensively. PAUP and TreePuzzle are such softwares that have been used frequently in recent years. However, the steps to use them are fairly complicated, bringing much difficulty to the beginners. The introduction to usage of PAUP is provided from some aspects, such as the sequence information module, the sequence parameter module, the operation command module. Besides, a brief introduction is made on the usage and the annotation to phylogenetic trees of TreePuzzle.

关 键 词：系统发生分析 PAUP TreePuzzle 

分 类 号：TP311[自动化与计算机技术—计算机软件与理论]