河南省有偿供血者HIV-1外膜蛋白env基因序列分析及表型预测  

Genetic Analysis of the Complete env Genes of HIV-1 from Paid Blood Donors in Henan Province

作　　者：冯霞[1] 杨海儒[1,2] 余双庆[1] 周玲[1] 李红霞[1] 李泽琳[2] 曾毅[1,2] 

机构地区：[1]中国疾病预防控制中心病毒病预防控制所传染病预防控制国家重点实验室,北京100052 [2]北京工业大学生命科学与生物医学工程学院病毒与药理室,北京100124

出　　处：《病毒学报》2009年第2期88-94,共7页Chinese Journal of Virology

基　　金：国家973(2005CB522903);国家自然科学基金(30872397)资助

摘　　要：应用套式聚合酶链反应(nested-PCR)从60例河南省HIV-1抗体阳性有偿献血者的外周血单核细胞的DNA样品中扩增全长env基因并对扩增产物测序,共扩增到21个全长env基因,序列分析发现其中15个env基因有完整的可读框(ORF),14个为B'亚型,与国际参考株RL42的基因离散率为4.87%±0.31%,1个为B亚型,与国际参考株HXB2的基因离散率为5.43%。根据核苷酸序列推导出相应的氨基酸序列,并且分析及比较了重要的功能结构域。发现这15个序列的N糖基化位点和数目没有显著变化;CD4受体结合位点高度保守;根据V3环氨基酸序列及净电荷数目,预测大多数分离株使用CCR5辅助受体;V3环四肽序列以典型欧美B亚型GPGR最多,占40%;gp120/gp41剪切位点高度保守,预测所有gp160前体都能有效剪切;四种广谱中和抗体2G12I、gG1b12、4E10及2F5的识别位点高度保守,表明大多数分离株对这四种中和抗体敏感。有必要进一步阐明env基因型与相关功能的关系,这将为疫苗研究和药物开发提供依据。Complete HIV-1 env genes were amplified by nested PCR from uncultured peripheral blood mononuclear cells （PBMCs） DNA of 60 HIV-1 positive paid blood donors in Henan province, and the amplified full-length genes were sequenced. Twenty one full-length env genes were obtained, sequence analysis found that 15 of them had intact open reading frame （ORF）. Fourteen sequences conformed to subtype B, their average genetic distance with the international reference sequence RL42 was 4.87% ±0.31%. One was subtype B, its genetic distance with the international reference sequence HXB2 was 5.43%. The amino acid sequences of these env genes were deduced according to their nucleotide sequences and extensive analysis and comparison of important structural motifs were performed. The results indicated that there was no drastic alteration in the number and position of potential N-linked glycosylation sites among these 15 sequences. And the residues involved in forming the CD4 binding site were highly conserved. Genotype prediction of coreceptor usage based on V3 sequence and net charge suggested that most samples use CCR5 coreceptor. GPGR motif at the tetrapeptide crown in the V3 loop was most common in these samples and it was detected in 40% sequences. The cleavage site of gp120/gp41 was highly conserved, so Gpl60 precursor of all isolates would be efficiently cleaved into the Gpl20 and Gp41 subunits. The known neutralizing antibody binding sites for 2G12, IgG1b12, 4E10 and 2F5 were also highly conserved, it is expected that most of these isolates will be sensitive to neutralization by these antibodies. Further study to elucidate the correlation of the env genotype to functionally relevant motifs is necessary and that will aid vaccine and novel drug design.

关 键 词：供血者 HIV-1 序列测定 基因 env 

分 类 号：R373.9[医药卫生—病原生物学]