Genetic Variation of the ORF5 Gene of Porcine Reproductive and Respiratory Syndrome Virus in East China during 2008-2010  

2008-2010年中国华东地区PRRSV ORF5基因遗传变异分析(英文)

作　　者：王小敏[1] 何孔旺[1] 张文文[1,2] 陈蔚[1,2] 茅爱华[1] 俞正玉[1] 温立斌[1] 倪艳秀[1] 张雪寒[1] 吕立新[1] 郭容利[1] 周俊明[1] 李彬[1] 

机构地区：[1]江苏省农业科学院兽医研究所/农业部动物疫病诊断与免疫重点开放实验室/国家兽用生物制品工程技术研究中心,江苏南京210014 [2]南京农业大学动物医学院,江苏南京210095

出　　处：《Agricultural Science & Technology》2012年第6期1234-1239,1276,共7页农业科学与技术（英文版）

基　　金：Supported by Funds for Agricultural Science and Technology Innovation in Jiangsu Province (cx(10)424)~~

摘　　要：[Objective] A total of 260 swine samples of dead or sick pigs collected from 7 provinces （municipalities） Jiangsu, Anhui, Shanghai, Shandong, Zhejiang, Fujian and Jiangxi of China during 2008-2010 were detected for porcine reproductive and respiratory syndrome virus （PRRSV）. And the ORF5 genes of some isolates were amplified and sequenced for understanding the molecule epidemiology and the genetic evolution of PRRSV in East China. [Method] Using RT-PCR method, PRRSV was detected by RT-PCR from samples. The complete ORF5 genes of 36 PRRSV positive samples was amplified, sequenced and analyzed with other 15 strains available on GenBank. [Result] PRRSV was detected in 118/260 of the clinical samples, with a positive rate was 45.4%. Sequence analysis showed that the 36 isolates of this study belonged to the North American-type PRRSV strains and were closely related to the highly pathogenic PRRSV （HP-PRRSV） with 94.6%-100% amino acid sequence identities. The sequence analysis combined with the phylogenetic analysis indicated that all these North American-type PRRSV strains in East China were further divided into five subgenotypes, subgenotype Ⅲ showed closer identity with HPPRRSV; almost all subgenotypes were found to be variable in the primary neutralizing epitope; subgenotypes Ⅲ and IV had more glycosylation sites than others. Although these 36 isolates were collected from different provinces in East China, there were no obvious relations between the distribution of PRRSV and the region. [Conclusion] The PRRSV infection was widespread and HP-PRRSV was the popular strain in East China during 2008-2010. However some different genetic characteristics appeared in the genomes, the genetic evolution was relatively stable. There exists a cross-cutting phenomenon on the genetic relationship of PRRSV isolates obtained from different provinces. Subgenotypes IV and V only appeared in some provinces, but the distribution of PRRSV did not show apparent geographical characteristics.[目的]对来自2008～2010年中国华东地区7个不同省市的疑似猪繁殖与呼吸综合征(PRRS)发病猪场送检的病料进行PRRSV检测,并对其ORF5基因进行测序,确定当前PRRSV在中国华东地区的分子流行病学特征,并分析PRRSV在中国的遗传演化规律。[方法]利用RT-PCR方法对采集的样品进行PRRSV检测,并对PRRSV检测呈阳性的36份病料进行ORF5基因的序列测定和分析。[结果]260份病料中共检测到118份PRRSV阳性样品,阳性率为45.4%。ORF5序列分析和系统进化树分析结果表明,本试验所获得的36株PRRSV毒株序列均属于北美型,与GenBank中高致病性PRRSV(HP-PRRSV)参考毒株的氨基酸同源性为94.6%～100%,并可分为5个亚群,亚群III与HP-PRRSV同源性最高,几乎所有的亚群中和表位(primaryn eutralizing epitope,PNE)都存在变异,亚群III和IV相对于其它亚群具有更多的糖基化位点。由于36个毒株是于2008～2010年间采集自安徽、江苏、上海等7省,进化树分析结果表明,病毒的分型并没有呈现明显的地域性。[结论]2008-2010年间中国华东地区普遍存在PRRSV感染,PRRSV流行株为HP-PRRSV,其遗传演化相对稳定,但也具有不同的遗传特征。来源于不同省市的PRRSV毒株的遗传关系存在交叉,虽然亚群IV和V只出现在部分省市,但PRRSV的分布没有呈现明显的地域特征。

关 键 词：Porcine reproductive and respiratory syndrome （PRRS） East China ORF5 gene Genetic variation 

分 类 号：S852.65[农业科学—基础兽医学]