Rapid and accurate evaluation of the binding energies and the individual N H…O=C, N H…N, C H…O=C, and C H…N interaction energies for hydrogen-bonded peptide-base complexes  

作　　者：HUANG CuiYing LI Yang WANG ChangSheng 

机构地区：[1]School of Chemistry and Chemical Engineering, Liaoning Normal University

出　　处：《Science China Chemistry》2013年第2期238-248,共11页中国科学（化学英文版）

基　　金：supported by the National Natural Science Foundation of China(20973088,21173109,21133005);the Specialized Research Fund for the Doctoral Program of Higher Education(20102136110001)

摘　　要：The binding energies of thirty-six hydrogen-bonded peptide-base complexes, including the peptide backbone-ase complexes and amino acid side chain-base complexes, are evaluated using the analytic potential energy function established in our lab recently and compared with those obtained from MP2, AMBER99, OPLSAA/L, and CHARMM27 calculations. The comparison indicates that the analytic potential energy function yields the binding energies for these complexes as reasonable as MP2 does, much better than the force fields do. The individual N H…O=C, N H…N, C H…O=C, and C H…N attractive interaction energies and C=O…O=C, N H…H N, C H…H N, and C H…H C repulsive interaction energies, which cannot be easily obtained from ab initio calculations, are calculated using the dipole-dipole interaction term of the analytic potential energy function. The individual N H…O=C, C H…O=C, C H…N attractive interactions are about 5.3±1.8, 1.2±0.4, and 0.8 kcal/mol, respectively, the individual N H … N could be as strong as about 8.1 kcal/mol or as weak as 1.0 kcal/mol, while the individual C=O…O=C, N H…H N, C H…H N, and C H…H C repulsive interactions are about 1.8±1.1, 1.7±0.6, 0.6±0.3, and 0.35±0.15 kcal/mol. These data are helpful for the rational design of new strategies for molecular recognition or supramolecular assemblies.Figure S1 shows the optimal structures of the thirty-six hydrogen bonded peptide-base complexes and some selected maininteraction distances. (Plain: MP2/6-311+G(d,p); Italic: MP2/6-311+G(d,p) with BSSE correction; Bold: Eq.(1).) Table S2shows the binding energy curves of the thirty-six hydrogen bonded peptide-base complexes. The asterisk points represent

关 键 词：hydrogen bond peptide-base complexes total binding energy individual hydrogen bonding energy dipole-dipole interaction 

分 类 号：O621.1[理学—有机化学]