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出 处:《华侨大学学报(自然科学版)》2014年第4期419-423,共5页Journal of Huaqiao University(Natural Science)
摘 要:为了探究环肽纳米管介导离子和小分子物质的跨膜转运机制,以环八肽纳米管中Na+为模型,采用拉伸分子动力学方法,研究了Na+在自组装环八肽纳米管{cyclo[-(D-Ala-L-Ala-)4-]}10中的传输.Na+沿纳米管轴向拉力作用方向运动,在每个环平面波动较长时间,占据环中心位置,然后迅速通过环间,跃迁到下一环平面.研究结果表明:Na+以跳跃方式在环肽纳米管中传输的平均速度为0.837m·s-1,其中在环平面的传输速度几乎为0,而在环间的瞬时传输速度可达350.8m·s-1,平均传输速度为111.8m·s-1.Na+在环肽纳米管内的环平面内受到阻力作用,在环间受到拉力作用.In order to explore the mechanisms of cyclic peptide nanotube-mediated transmembrane transport of ions and small molecules, Na+ constrained in cyclic octa-peptide nanotube was selected as the model to investigate Na+ transport in the self-organized {cyclo[-(D-Ala-L-Ala-)4-]}10 peptide nanotube using steered molecular dynamics (SMD). Na+ moves along the pulling force direction which is parallel to the channel axis, and vibrates up and down at the center of every ring plane for a long time, then quickly jumps through the inter-ring to the next ring plane. The results show that in the jumping way Na+ transport through cyclic octa-peptide nanotube, the average transport rate is 0. 837 m· s-1 ; the speed is almost zero at ring plane; while the instantaneous speed is up to 350. 8 m· s-1 and the average rate is 111.8 m· s-1 be- tween the middle planes. The force exerted on Na+ appears to be the resistance force at the ring plane and the pulling force between neighboring rings.
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