Studies on Hydrolysis Mechanism of Anticancer Ruthenium Drug ImH[trans-Ru(Im)2Cl4] via ABEEMσπ Polarizable Force Field Combined with QM and MD-FEP  

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出  处:《Chemical Research in Chinese Universities》2017年第2期239-247,共9页高等学校化学研究(英文版)

摘  要:We used ABEEMon(atom-bond electronegativity equalization method) polarizable force field(ABEEMσπ PFF) method combined with QM and molecular dynamics-free energy perturbation(MD-FEP) methods to investigatethe function of water molecules in hydrolysis process of ImH[trans-Ru(Im)2Cl4](ICR). The activation free energiesobtained via MD-FEP calculation are in fair agreement with the experimental data. In addition, QM/MM(ABEEM)rationally describes the charge distributions and the electrostatic interaction between molecules. ABEEMσπ fluctua-ting charge model has the following good characteristics: (1) not only atomic charge regions but also σ,π bond andlone pair charge regions are explicitly represented for a molecule; (2) the region charges are geometry dependent andcalculated from time to time in the dynamic simulation without any iterative procedure so that its performance istime-saving compared with the Drude model and induced dipole model.

关 键 词:Atom-bond ELECTRONEGATIVITY equalization method(ABEEMσπ) polarizable force field Quantum mecha-nics/molecular mechanics(QM/MM) MOLECULAR dynamics-free ENERGY perturbation Hydrolysis mechanism Activationfree ENERGY 

分 类 号:O[理学]

 

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