微滴式数字PCR中低浓度荧光微滴分类  

Identification of florescent droplets at low concentrations for droplet digital PCR

作　　者：刘聪[1,2] 董文飞 张涛[1] 周武平[1] 蒋克明[1] 黎海文[1] LIU Cong;DONG Wen-fei;ZHANG Tao;ZHOU Wu-ping;JIANG Ke-ming;LI Hai-wen(Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences,Suzhou 215163,China;University of Chinese Academy of Sciences,Beijing 100039,China)

机构地区：[1]中国科学院苏州生物医学工程技术研究所,江苏苏州215163 [2]中国科学院大学,北京100039

出　　处：《光学精密工程》2018年第3期647-653,共7页Optics and Precision Engineering

基　　金：中国科学院科研装备研制资助项目(No.YZ201444);苏州市科技发展计划资助项目(No.SYG201503)

摘　　要：数字PCR检测过程中,确定微滴是否为阳性直接影响最终浓度,也是影响仪器准确度的重要因素之一。目前的自动分类方法并未考虑到数字PCR技术中浓度对结果误差的影响,导致在低浓度下自动设置的方法与实际结果偏差较大。本文设计了一种基于广义帕累托分布的荧光微滴分类方法,讨论了不同浓度下误分类对结果可能的影响,据此确定了分布模型参数,并在自行研制的微滴式数字PCR仪上进行验证。实验结果显示:经本文方法分类后,样品中目标拷贝数在5~5 000的范围内线性回归的r_2=0.995 6,这意味着广义帕累托分布较好地拟合了微滴荧光强度边界分布,本文提出的荧光微滴自动分类方法在低浓度下取得了较好的效果。In the digital Polymerase Chain Reaction(dPCR)detection process,discriminating positive droplets from negative ones directly affect the final concentration,which is one of the important factors affecting the accuracy of the instrument.Current methods do not take into account the influence of sample concentration on the result error,resulting in a larger deviation from the actual results at a low concentration.In this paper,a florescent droplets classification method was designed based on generalized Pareto distribution.It was discussed that the possible effects of misclassification at different concentrations on the results,determined the high quantiles of generalized Pareto distribution,and verified the proposed method on the self-made droplet digital PCR.Experimental results showed that for the method proposed,the linear regression of samples with target copies from 5 to 5 000 got an r 2=0.995 6 and a detection limit of less than 5 copies/samples,while that of the comparison method was less than 50 copies/sample.These results indicate that the proposed method improves the lower detection limit of the droplet digital PCR by oneorder,and can achieve automated droplet classification at ultra-low concentration.

关 键 词：数字PCR 广义帕累托分布 荧光微滴分类 

分 类 号：TP274.6[自动化与计算机技术—检测技术与自动化装置]