QTL-seq analysis of the seed size trait in grape provides new molecular insights on seedlessness  

作　　者：WANG Li ZHANG Song-lin JIAO Chen LI Zhi LIU Chong-huai WANG Xi-ping 

机构地区：[1]State Key Laboratory of Crop Stress Biology in Arid Areas/College of Horticulture,Northwest A&F University,Yangling 712100,P.R.China [2]College of Horticulture,Hebei Agricultural University,Baoding 071001,P.R.China [3]Zhengzhou Fruit Research Institute,Chinese Academy of Agricultural Sciences,Zhengzhou 450000,P.R.China [4]Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China of Ministry of Agriculture and Rural Affairs,Northwest A&F University,Yangling 712100,P.R.China

出　　处：《Journal of Integrative Agriculture》2022年第10期2910-2925,共16页农业科学学报（英文版）

基　　金：supported by the National Natural Science Foundation of China (U1603234);the Program for Innovative Research Team of Grape Germplasm Resources and Breeding of Shaanxi, China (2013KCT25);the Chinese Universities Scientific Fund (Z109021571 and 2452019170);the Natural Science Foundation of Hebei, China (C2021204146);the Scientific Research Program of Hebei Educational Commission, China (QN2020232)

摘　　要：Seedlessness in grape(Vitis vinifera)is an important commercial trait for both the fresh and drying markets.However,despite numerous studies,the mechanisms and key genes regulating grape seedlessness are mostly unknown.In this study,we sequenced the genomes of the V.vinifera seeded cultivar‘Red Globe’,the seedless cultivar‘Centennial Seedless’,and the derived hybrids.Nonsynonymous single nucleotide polymorphisms(SNPs)were identified by genome sequencing and analyzed using published transcriptome data.Nonsynonymous SNPs occurred in genes related to seed development,which were identified as protein kinases,transcription factors,and cytochrome P450 s and showed differential expression during ovule development in both seeded and seedless grapes.These nonsynonymous SNP-associated genes were mainly involved in biological processes such as hormone balance,seed coat and endosperm development,reproductive organ development,oxidation and reduction,senescence and cell death.A potential quantitative trait locus(QTL)region associated with seed size was characterized based on the SNP-index,and expression analysis of candidate genes in the QTL region during ovule development in multiple seeded and seedless grape cultivars were conducted.Three SNPs were further subjected to SNa Pshot analysis and one SNP in G8 showed 67.5%efficiency in the grape progeny validation.Overall,the data obtained in this study shed light on the differences in seed development between seeded and seedless progeny at the genomic level,which provides valuable resources for future functional studies and grape breeding.

关 键 词：GRAPE GENOME QTL-seq SEEDLESS SNP 

分 类 号：S663.1[农业科学—果树学]