萝卜赤霉素生物合成和信号转导相关基因的全基因组鉴定及表达分析  

Genome-wide Identification and Expression Analysis of Genes Related to Gibberellin Biosynthesis and Signal Transduction in Radish

作　　者：阳文龙 李锡香[1] 张晓辉[1] 宋江萍[1] 贾会霞 王海平[1] YANG Wenlong;LI Xixiang;ZHANG Xiaohui;SONG Jiangping;JIA Huixia;WANG Haiping(Institute of Vegetables and Flowers,Chinese Academy of Agricultural Sciences,Beijing 100081,China)

机构地区：[1]中国农业科学院蔬菜花卉研究所,北京100081

出　　处：《华北农学报》2022年第6期1-14,共14页Acta Agriculturae Boreali-Sinica

基　　金：中国农业科学院科技创新工程项目(CAAS-ASTIP-2017-IVFCAAS);国家园艺种质北京蔬菜分库运行服务项目(NHGRC2022-NH01);中国农业科学院基本科研业务费专项(IVF-BRF201901)。

摘　　要：赤霉素途径是植物开花调控中的一条重要途径。为了解赤霉素途径相关基因在萝卜开花调控中的作用,利用生物信息学方法对萝卜赤霉素生物合成和信号转导相关基因的结构、理化性质、染色体分布、启动子顺式作用元件和组织特异性表达进行了分析,并对不同开花期萝卜材料中这些基因的表达水平进行了实时荧光定量PCR检测。结果表明,萝卜基因组含有46个赤霉素生物合成和信号转导相关基因,CPS、KS、KO、KAO、GA20OX、GA3OX、GA2OX、GAI、RGA、RGL、GID1、SKP2分别有2,1,2,2,9,5,12,1,1,4,3,4个,它们不均匀分布于9条染色体上,其编码蛋白质分子质量为21.32~127.80 ku,等电点为4.72~9.04;基因结构和保守结构域分析发现,这46个基因的外显子数为1~21个不等,且一些保守基序为大部分基因所共有。启动子顺式作用元件分析表明,这46个基因的启动子含有与光、赤霉素、生长素、ABA、SA、低温、干旱等响应的顺式作用元件。利用萝卜基因表达数据库分析发现,这46个基因在不同组织和不同发育时期的表达量不同;实时荧光定量PCR检测表明,这些基因在早开花材料心里美萝卜和晚开花材料野萝卜中的表达量有明显差异,暗示其可能与萝卜的生殖生长有较密切的关系。Gibberellin pathway is an important pathway in plant flowering regulation.In order to understand the role of gibberellin pathway related genes in the regulation of radish flowering.The structure,physicochemical properties,chromosome distribution,promoter cis-elements and tissue-specific expression of gibberellin biosynthesis and signal transduction related genes in radish were analyzed by bioinformatics.The expression levels of these genes in radish varieties with different florescence were detected by Real-time fluorescence quantitative PCR(qPCR).The results showed there were 46 genes related to gibberellin biosynthesis and signal transduction in radish genome,among them,the gene numbers of CPS,KS,KO,KAO,GA20OX,GA3OX,GA2OX,GAI,RGA,RGL,GID1 and SKP2 were 2,1,2,2,9,5,12,1,1,4,3 and 4,respectively.They were unevenly distributed on 9 chromosomes,molecular weight of their coding proteins were 21.32-127.80 ku,and the isoelectric points of the proteins were from 4.72 to 9.04.The analysis of gene structure and conserved domain showed that the number of exons of these 46 genes ranged from 1 to 21,and some conserved motifs were shared by most genes.Promoter cis-elements analysis showed that the promoters of these 46 genes contained cis-elements related to light,gibberellin,auxin,ABA,SA,low temperature,drought,etc.Using radish gene expression database analysis,it was found that the expression levels of these 46 genes were different in different tissues and at different developmental stages;qPCR detection showed that there were significant differences in the expression of these genes between early flowering material Xinlimei and late flowering material wild radish,suggesting that they may be closely related to the reproductive growth of radish.

关 键 词：萝卜 赤霉素生物合成 信号转导 基因 表达分析 

分 类 号：Q78[生物学—分子生物学] S631.1[农业科学—蔬菜学]