基于MALDI-TOF MS的不同机器学习模型对肺炎克雷伯菌亚胺培南药物敏感性预测的诊断效能比较  

Comparison of the diagnostic effect on different machine learning predictive model of imipenem sensitivity of Klebsiella pneumoniae based on MALDI-TOF MS

作　　者：程菡 刘刚[2] 张丽霞[2] 王琴[1] 朱彧 Cheng Han;Liu Gang;Zhang Lixia;Wang Qin;Zhu Yu(Department of Clinical Laboratory,Tianjin Huanhu Hospital,Tianjin 300350,China;Department of Clinical Laboratory,Tianjin Haihe Hospital,Tianjin 300350,China;Department of Clinical Laboratory,Tianjin Third Central Hospital,Tianjin 300170,China)

机构地区：[1]天津市环湖医院检验科,天津300350 [2]天津市海河医院检验科,天津300350 [3]天津市第三中心医院检验科,天津300170

出　　处：《中华检验医学杂志》2023年第6期612-617,共6页Chinese Journal of Laboratory Medicine

基　　金：京津冀基础研究合作专项(20JCZXJC00030);天津市临床重点学科(专科)建设项目;天津市医院协会医院管理研究项目(2022ZZ10)。

摘　　要：目的机器学习是人工智能的一个重要分支及支撑技术,本研究拟比较基于基质辅助激光解吸电离飞行时间质谱(MALDI-TOF-MS)技术的4种肺炎克雷伯菌对亚胺培南药物敏感性机器学习预测模型的诊断效能。方法回顾性研究。收集2019年1月至2020年12月天津市海河医院检验科微生物室临床标本中分离的684株肺炎克雷伯菌的MALDI-TOF MS质谱峰和亚胺培南药敏数据,从中按照简单随机方法选取亚胺培南敏感株和耐药株各70株的质谱峰数据作为训练集,以及敏感株和耐药株各30株建立测试集模型,对上述200份标本的质谱峰数据经归一化处理后进行正交偏最小二乘判别分析(OPLS-DA)后,再分别通过最小绝对值选择与收缩算子(LASSO)、逻辑回归(LR)、支持向量机(SVM)和神经网络(NN)算法建立训练集数据模型,通过网格搜索算法和10折交叉验证选取最好的训练集和测试集模型曲线下面积(AUC)和混淆矩阵,通过测试集混淆矩阵验证预测模型的正确率。结果OPLS-DA分析的R^(2)Y和Q^(2)分别为0.5463和0.0178,最优的LASSO、LR、SVM和NN算法训练集和测试集的AUC分别为1.0000和0.8581、1.0000和0.8201、0.9408和0.7561、1.0000和0.6972,训练集模型对耐药预测准确率分别为99%(69/70)、100%(70/70)、91%(64/70)和100%(70/70),药物敏感预测准确率分别为100%(70/70)、100%(70/70)、90%(63/70)和100%(70/70),正确率分别为99%(139/140)、100%(140/140)、91%(127/140)和100%(140/140),经测试集验证分别对耐药预测准确率为93%(28/30)、87%(26/30)、60%(18/30)和60%(18/30),药物敏感预测准确率分别为100%(30/30)、80%(24/30)、93%(28/30)和67%(20/30),正确率分别为97%(58/60)、83%(50/60)、77%(46/60)和63%(38/60)。结论LASSO算法建立的肺炎克雷伯菌对亚胺培南药物敏感性预测模型具有较高的诊断效能,具有潜在的临床辅助决策支持能力。Objective Machine learning is not only an important branch of artificial intelligence,but also supporting technologies for bioinformatics analysis.In the presence work,four machine-learning-predictive model for the drug-sensitivity of Klebsiella pneumoniae to imipenem were established based on matrix-assisted laser desorption ionization time-of-flight mass spectrometry(MALDI-TOF-MS)and the diagnostic effect of these methods was exmained.Methods A retrospective study was performed and the data of MALDI-TOF-MS and imipenem sensitivity of a total number of 684 cases Klebsiella pneumoniae isolated from clinical specimens in the laboratory of microbiology department of Tianjin Haihe Hospital from 2019 January to 2020 December were collected.The mass spectrometry and imipenem sensitivity data of 70 cases identified as imipenem-sensitive and 70 resistant cases were simple randomly selected to establish the training set model;whereas 30 cases of sensitive and 30 cases of resistant cases were randomly selected to establish the test set model.Mass spectral peak data were subjected to Orthogonal Partial least squares Discriminant Analysis(OPLS-DA).The training set data model was established by machine learning least absolute shrinkage and selection operator(LASSO)algorithm,Logistic Regression(LR)algorithm,Support vector machines(SVM)algorithm,neural network(NN)algorithm.The area under the curve(AUC)and confusion matrix of training set and test set model were calculated and selected by Grid search and 10-fold Cross-validation respectively,the accuracy of the prediction model was verified by test set confusion matrix.Results The R²Y and Q²of OPLS-DA were 0.5463 and 0.0178.The AUC of the best training set and test set models were 1.0000 and 0.8581,1.0000 and 0.8201,0.9408 and 0.7561,1.0000 and 0.6972 evaluated by LASSO,LR,SVM and NN model respectively.The accuracy of the model were 99%(69/70),100%(70/70),91%(64/70)and 100%(70/70)for prediction of drug resistance,100%(70/70),100%(70/70),90%(63/70)and 100%(70/70)for drug sensi

关 键 词：人工智能 克雷伯菌 肺炎 机器学习 亚胺培南 

分 类 号：R446.5[医药卫生—诊断学]