TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining  

作　　者：Chengjie Chen Ya Wu Jiawei Li Xiao Wang Zaohai Zeng Jing Xu Yuanlong Liu Junting Feng Hao Chen Yehua He Rui Xia 

机构地区：[1]State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources,College of Horticulture,South China Agricultural University,Guangzhou,Guangdong 510640,China [2]Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in South China,Ministry of Agriculture and Rural Affair,South China Agricultural University,Guangzhou,Guangdong 510640,China [3]Guangdong Laboratory for Lingnan Modern Agriculture,South China Agricultural University,Guangzhou,Guangdong 510640,China [4]Guangdong Key Laboratory of Non-human Primate Research,Guangdong-Hongkong-Macao Institute of CNS Regeneration,Jinan University,Guangzhou,Guangdong 510632,China [5]State Key Laboratory of Crop Stress Adaptation and Improvement,Henan Joint International Laboratory for Crop Multi-Omics Research,School of Life Sciences,Henan University,Kaifeng 475004,China [6]Key Laboratory of Genetic Improvement of Bananas,Sanya Research Institute,State Key Laboratory of Tropical Crop Breeding,Institute of Tropical Bioscience and Biotechnology,Chinese Academy of Tropical Agricultural Sciences,Haikou,Hainan 571101,China [7]College of Agronomy,Hunan Agricultural University,Changsha 410128,China

出　　处：《Molecular Plant》2023年第11期1733-1742,共10页分子植物（英文版）

基　　金：supported by the Key Area Research and Development Program of Guangdong Province(2022B0202070003,and 2021B0707010004);supported by the National Science Foundation of China(#32072547,and#32102320);the National Key Research and Development Program(2021YFF1000101,and 2019YFD1000500);the Special Support Program of Guangdong Province(2019TX05N193);the Scientific Research Foundation of the Hunan Provincial Education Department(20A261),);the open competition program of top ten critical priorities of Agricultural Science and Technology Innovation for the 14th Five-Year Plan of Guangdong Province(2022SDZG05);C.C.is supported by the Guangzhou Municipal Science and Technology Plan Project(2023A04J0113);J.F.is supported by the Hainan Provincial Natural Science Foundation of China(323QN279).

摘　　要：Since the official release of the stand-alone bioinformatics toolkit TBtools in 2020,its superior functionality in data analysis has been demonstrated by its widespread adoption by many thousands of users and references in more than 5000 academic articles.Now,TBtools is a commonly used tool in biological laboratories.Over the past 3 years,thanks to invaluable feedback and suggestions from numerous users,we have optimized and expanded the functionality of the toolkit,leading to the development of an upgraded version—TBtools-II.In this upgrade,we have incorporated over 100 new features,such as those for comparative genomics analysis,phylogenetic analysis,and data visualization.Meanwhile,to better meet the increasing needs of personalized data analysis,we have launched the plugin mode,which enables users to develop their own plugins and manage their selection,installation,and removal according to individual needs.To date,the plugin store has amassed over 50 plugins,with more than half of them being independently developed and contributed by TBtools users.These plugins offer a range of data analysis options including co-expression network analysis,single-cell data analysis,and bulked segregant analysis sequencing data analysis.Overall,TBtools is now transforming from a stand-alone software to a comprehensive bioinformatics platform of a vibrant and cooperative community in which users are also developers and contributors.By promoting the theme“one for all,all for one”,we believe that TBtools-II will greatly benefit more biological researchers in this big-data era.

关 键 词：TBtools-ll PLUGIN biological big data BSA-seq 

分 类 号：Q94[生物学—植物学]