Triplex-structure based DNA circuits with ultra-low leakage and high signal-to-noise ratio  

作　　者：Huan Liu Zhihao Ming Yuanpeng Zhang Qidong Xia Hao Hu Ruijie Liu Yuheng Liao Yizhou Liu Xiao Liu Xiaoping Zhang Longjie Li Shaogang Wang Xianjin Xiao 

机构地区：[1]Institute of Reproductive Health,Tongji Medical College,Huazhong University of Science and Technology,Wuhan 430030,China [2]Department and Institute of Urology,Tongji Hospital,Tongji Medical College,Huazhong University of Science and Technology,Wuhan 430030,China [3]Department and Institute of Urology,Union Hospital,Tongji Medical College,Huazhong University of Science and Technology,Wuhan 430030,China [4]School of Life Science and Technology,Wuhan Polytechnic University,Wuhan 430030,China [5]Department of Laboratory Medicine,Tongji hospital,Tongji Medical College,Huazhong University of Science and Technology,Wuhan 430030,China

出　　处：《Chinese Chemical Letters》2024年第1期465-470,共6页中国化学快报（英文版）

基　　金：the National Natural Science Foundation of China(No.81871732);the National Key Research and Development Program of China(No.2021YFC2701402);the Open Research Fund of State Key Laboratory of Bioelectronics,southeast University(No.Sklb2021-k06);the Open Foundation of NHC Key Laboratory of Birth Defect for Research and Prevention(Hunan Provincial Maternal and Child Health Care Hospital)(No.KF2020007);the Open Foundation of Translational Medicine National Science and Technology Infrastructure(Shanghai)(No.TMSK-2021-141);the Open Fund from Key Laboratory of Cellular Physiology(Shanxi Medical University);Ministry of Education,China(No.CPOF202103).

摘　　要：DNA circuits are powerful tools in various applications such as logical computation,molecular diagnosis and synthetic biology.Leakage is a major problem in constructing complex DNA circuits.It directly affects the output signal and harms the circuit’s performance significantly.In the traditional DNA circuits,the gate complex is a duplex structure.There are insufficient energy barriers to prevent spontaneous detachment of strands,resulting in a leak prone.Herein,we have developed triplex-structure based DNA circuit with ultra-low leakage and high signal-to-noise ratio(SNR).The triplex structure improves the stability in the absence of input.At the same time,the driving force of the strand displacement cascades reduces the influence of the triplex structure on the desired reaction.The SNR of the DNA circuit was increased to 695,while the desired reaction rate remained 90%of the conventional translator circuit.The triplex-structure mediated leakage prevention strategy was further tested at different temperatures and in DNA translator and seesaw circuits.We also constructed modular basic logic gates with a high efficiency and low leakage.On this basis,we further constructed triplex-structure based tertiary DNA logic circuits,and the SNR reached 295,which,to the best of our knowledge,was among the highest of the field.We believe that our scheme provides a novel,valid,and general tool for reducing leakages,and we anticipate that it will be widely adopted in DNA nanotechnology.

关 键 词：LEAKAGE DNA strand displacement cascades TRIPLEX DNA circuits Molecular programming 

分 类 号：Q75[生物学—分子生物学] TN710[电子电信—电路与系统]