SMRT-AgRenSeq-d in potato (Solanum tuberosum) as a method to identify candidates for the nematode resistance Gpa5  

作　　者：Yuhan Wang Lynn H.Brown Thomas M.Adams Yuk Woon Cheung Jie Li Vanessa Young Drummond T.Todd Miles R.Armstrong Konrad Neugebauer Amanpreet Kaur Brian Harrower Stan Oome Xiaodan Wang Micha Bayer Ingo Hein 

机构地区：[1]Division of Plant Sciences at the Hutton,The University of Dundee,Errol Road,Invergowrie,Dundee,DD25DA,UK [2]The James Hutton Institute,Errol Road,Invergowrie,Dundee,DD25DA,UK [3]College of Plant Protection,China Agricultural University,Haidian District,Beijing,100083,China [4]James Hutton Limited,The James Hutton Institute,Errol Road,Invergowrie,Dundee,DD25DA,UK [5]Biomathematics and Statistics Scotland,Errol Road,Invergowrie,Dundee,DD25DA,UK [6]Crop Research Centre,Teagasc,Oak Park,Carlow R93 XE12,Ireland [7]HZPC Research B.V.HZPC,Edisonweg 5,8501 XG Joure,Netherlands

出　　处：《Horticulture Research》2023年第11期271-279,共9页园艺研究（英文）

基　　金：supported by the Rural&Environment Science&Analytical Services(RESAS)Division of the Scottish Government through project JHI-B1-1,the Biotechnology and Biological Sciences Research Council(BBSRC)through award BB/S015663/1 and the Royal Society through award NAF\R1\201061;YW was supported through the CSC scholarship program,China.LB was supported through the East of Scotland Bioscience Doctoral Training Partnership(EASTBIO DTP);funded by the BBSRC award BB/T00875X/1.AK was supported through a Research Leaders 2025 fellowship funded by European Union’s Horizon 2020 research and innovation programme under Marie Sklodowska-Curie grant agreement no.754380.

摘　　要：Potato is the thirdmost important food crop in theworld.Diverse pathogens threaten sustainable crop production but can be controlled,in many cases,through the deployment of disease resistance genes belonging to the family of nucleotide-binding,leucine-rich-repeat(NLR)genes.To identify effective disease resistance genes in established varieties,we have successfully established SMRT-AgRenSeq in tetraploid potatoes and have further enhanced the methodology by including dRenSeq in an approach that we term SMR-AgRenSeq-d.The inclusion of dRenSeq enables the filtering of candidates after the association analysis by establishing a presence/absence matrix across resistant and susceptible varieties that is translated into an F1 score.Using a SMRT-RenSeq-based sequence representation of the NLRome from the cultivar Innovator,SMRT-AgRenSeq-d analyses reliably identified the late blight resistance benchmark genes Rpi-R1,Rpi-R2-like,Rpi-R3a,and Rpi-R3b in a panel of 117 varieties with variable phenotype penetrations.All benchmark genes were identified with an F1 score of 1,which indicates absolute linkage in the panel.This method also identified nine strong candidates for Gpa5 that controls the potato cyst nematode(PCN)species Globodera pallida(pathotypes Pa2/3).Assuming that NLRs are involved in controlling many types of resistances,SMRT-AgRenSeq-d can readily be applied to diverse crops and pathogen systems.

关 键 词：resistance LINKAGE CROPS 

分 类 号：S532[农业科学—作物学]