Two haplotype-resolved genomes reveal important flower traits in bigleaf hydrangea(Hydrangea macrophylla)and insights into Asterid evolution  

作　　者：Xingbo Wu Sheron A.Simpson Ramey C.Youngblood Xiaofen FLiu Brian E.Scheffler Timothy A.Rinehart Lisa W.Alexander Amanda M.Hulse-Kemp 

机构地区：[1]Department of Environmental Horticulture,Tropical Research and Education Center,University of Florida,Homestead,FL 33031,United States [2]Genomics and Bioinformatics Research Unit,USDA-ARS,Raleigh,NC 27695,United States [3]Genomics and Bioinformatics Research Unit,USDA-ARS,Stoneville,MS 38776,United States [4]Institute for Genomics,Biocomputing and Biotechnology,Mississippi State University,Starkville,MS 39762,United States [5]Crop Production and Protection,USDA-ARS,Beltsville,MD 20705,United States [6]Floral and Nursery Plants Research Unit,U.S.National Arboretum,USDA-ARS,McMinnville,TN 37110,United States [7]Department of Crop and Soil Sciences,North Carolina State University,Raleigh,NC 27695,United States

出　　处：《Horticulture Research》2023年第12期45-57,共13页园艺研究（英文）

基　　金：The research presented in this article was supported in part by funds from the Floral and Nursery Research Initiative administered through the United States Department of Agriculture,Agricultural Research Service(USDA-ARS).Theworkwas supported by USDA-ARS CRIS project numbers 6066-21310-005-00D and 8020-21000-072-000-D;The authors would like to thank Carrie Witcher for assistance with pollen collection and microscopy and Dr Jerry Jenkins from the HudsonAlpha Institute for Biotechnology for his technical advice on scaffolding.BenjaminMoore and Joseph Davis maintained the plants used in this experiment.This research used resources provided by the SCINet project of the USDA Agricultural Research Service,ARS project numbers 0500-00093-001-00-D and 5030-21000-069-00D.The mention of trade names of commercial products in the publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the US Department of Agriculture.

摘　　要：The Hydrangea genus belongs to the Hydrangeaceae family,in the Cornales order of flowering plants,which early diverged among the Asterids,and includes several species that are commonly used ornamental plants.Of them,Hydrangea macrophylla is one of the most valuable species in the nursery trade,yet few genomic resources are available for this crop or closely related Asterid species.Two high-quality haplotype-resolved reference genomes of hydrangea cultivars‘Veitchii’and‘Endless Summer’[highest quality at 2.22 gigabase pairs(Gb),396 contigs,N5022.8 megabase pairs(Mb)]were assembled and scaffolded into the expected 18 pseudochromosomes.Utilizing the newly developed high-quality reference genomes along with high-quality genomes of other related flowering plants,nuclear data were found to support a single divergence point in the Asterids clade where both the Cornales and Ericales diverged from the euasterids.Genetic mapping with an F1 hybrid population demonstrated the power of linkage mapping combined with the new genomic resources to identify the gene for inflorescence shape,CYP78A5 located on chromosome 4,and a novel gene,BAM3 located on chromosome 17,for causing double flower.Resources developed in this study will not only help to accelerate hydrangea genetic improvement but also contribute to understanding the largest group of flowering plants,the Asterids.

关 键 词：HYDRA TRAITS resolved 

分 类 号：Q943.2[生物学—植物学]