水产经济鱼类基因组大数据平台的构建与应用  

Construction and Application of a Big Data Platform for the Genome of Aquaculture Economy Fish

作　　者：徐淑坦 舒道德 曾魁 陈明[1,2] XU Shutan;SHU Daode;ZENG Kui;CHEN Ming(Key Laboratory of Ministry of Agriculture and Rural Affairs for Fishery Information,Shanghai Ocean University,Shanghai,201306;College of Information Technology,Shanghai Ocean University,Shanghai,201306)

机构地区：[1]上海海洋大学农业农村部渔业信息重点实验室,上海201306 [2]上海海洋大学信息学院,上海201306

出　　处：《基因组学与应用生物学》2024年第2期261-273,共13页Genomics and Applied Biology

基　　金：广东省重点领域研发计划专项(2021B0202070001);上海海洋大学科技发展专项基金(自然科学)(A2-2006-21-200208)共同资助。

摘　　要：水产经济鱼类是人类重要的蛋白质来源,对其基因组的研究在分子育种、分析水生生物进化等方面起到重要作用。目前,国内缺少分析水产经济鱼类基因测序数据的综合性数据平台。本文搜集并整理了20余种水产经济鱼类的基因组测序数据,并开发了水产经济鱼类基因组大数据平台。该平台包括数据存储、数据下载、数据分析,以及数据可视化展示等模块。通过该平台,用户可以快速检索鱼类基因的功能、表达水平、基因保守性以及共线性等。本研究开发的鱼类大数据平台将促进水产领域对鱼类基因组的分析。该大数据平台可通过IP 47.96.156.188访问。Economically important fish species play a crucial role as a source of protein for humans,and studying their genomes has significant implications in molecular breeding and evolutionary analysis of aquatic organisms.Currently,there is a lack of comprehensive data platforms for analyzing genomic sequencing data of economically important fish species in our country.To address this gap,this study has collected and curated genomic sequencing data for over twenty economically important aquatic species and developed the aquaculture economic fish Genomics big data platform.This platform comprises modules for data storage,data download,data analysis,and data visualization.Through this platform,users can quickly retrieve information on gene function,expression levels,gene conservation,and collinearity in fish.The fish big data platform developed in this study will facilitate genomic analysis in the field of aquaculture.The platform can be accessed via IP 47.96.156.188.

关 键 词：大数据平台 基因组功能 基因表达水平 基因保守性 共线性 

分 类 号：S917.4[农业科学—水产科学]