Comparative Transcriptome Analysis of Shell-Matrix-Protein Genes and Observation of the Shell Microstructure in the Deep-Sea Clam Calyptogena marissinica  

作　　者：SHI Yu LIU Dongting YAO Gaoyou HE Maoxian 

机构地区：[1]CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology,Guangdong Provincial Key Laboratory of Applied Marine Biology,South China Sea Institute of Oceanology,Chinese Academy of Sciences,Guangzhou 510301,China [2]Southern Marine Science and Engineering Guangdong Laboratory(Guangzhou),Guangzhou 511458,China [3]University of Chinese Academy of Sciences,Beijing 100049,China

出　　处：《Journal of Ocean University of China》2024年第3期797-810,共14页中国海洋大学学报（英文版）

基　　金：supported by the Major Project of Basic and Applied Basic Research of Guangdong Province(No.2019B030302004);the Guangdong Basic and Applied Basic Research Foundation(No.2023A1515030295);the Science and Technology Planning Project of Guangdong Province,China(No.2020B1212060058).

摘　　要：The deep-sea clam Calyptogena marissinica is widely distributed in the Haima cold seep ecosystem on the northwes-tern slope of the South China Sea with low pH values,low temperature and high pressure.Limited information is available on the biomineralization of this species.In this research,we generated a comprehensive transcript dataset of C.marissinica’s mantle tissue,and a total of 19821 unigenes were assembled.Fourteen shell matrix proteins(SMP)-related genes were identified.The qPCR results showed that four out of six prismatic matrix genes(MSP2,MSP5,prisilkin-39,and shematrin),four out of the six nacreous matrix genes(perlucin,pif,pif97,and papilin),and two extrapallial fluid proteins(SPARC and calmodulin)were significantly expressed in the mantle.Both the nacreous and the prismatic layers are chrysanthemum-shaped,which are stacked on the top of each other to form a laminated nacreous structure.The alignment and phylogenetic analysis of MSP-5,Prisilkin-39,Perlucin,and Pif homologues showed that some amino acids of C.marissinica that differed from those detected in other molluscs may cause the different shape of the nacreous and prismatic layers,but do not lead to a change in the species’evolutionary status.These results indicated the conservation of the functions of SMP-related genes in C.marissinica,and the specific shape of the prismatic and nacreous layers of this deep-sea mollusc,which will contribute to the research on the molecular regulation mechanisms of biomineralization in C.marissinica and provide a new perspective to investigate biomineralization in deep-sea clams in general.

关 键 词：TRANSCRIPTOME BIOMINERALIZATION mantle tissue shell Calyptogena marissinica 

分 类 号：S917.4[农业科学—水产科学]