高龄女性卵子颗粒细胞转录组的数据分析  

Analysis of oocyte granulosa cell transcriptome data in aged women

作　　者：秦立峰 王加强[1] 朱伶 Qin Lifeng;Wang Jiaqiang;Zhu Ling(College of Life Science,Northeast Agricultural University,Harbin 150030,Heilongjiang Province,China;Key Laboratory of Human Embryo Engineering,Chongqing Maternal and Child Health Care Hospital,Chongqing 400013,China)

机构地区：[1]东北农业大学生命科学学院,黑龙江省哈尔滨市150030 [2]重庆市妇幼保健院人类胚胎工程重庆市重点实验室,重庆市400013

出　　处：《中国组织工程研究》2025年第19期4069-4075,共7页Chinese Journal of Tissue Engineering Research

基　　金：重庆市自然科学基金面上项目(cstc2021jcyj-msxmX0785),项目参与人:朱伶。

摘　　要：背景:颗粒细胞的状态很大程度上影响卵母细胞的质量。随着高龄女性在辅助生殖中占比不断增多,为了能更好地评估卵母细胞的质量,此研究在转录水平对不同年龄段患者来源的颗粒细胞进行了检测。目的:探究低龄和高龄患者颗粒细胞mRNA及长链非编码RNA表达变化。方法:在辅助生殖治疗周期中收集患者取卵时获得的废弃卵丘颗粒细胞,其中低龄组患者年龄为25-35周岁,高龄组患者年龄为38-45周岁。对低龄和高龄女性颗粒细胞进行RNA-seq分析,每组3个重复。结果与结论:①RNA-seq分析结果显示,样本平均测序量超过14 G,质控后的数据质量Q30超过93%,数据平均比对率为98.4%,表明数据质量较好;②主成分分析及相关性分析结果显示高龄组和低龄组样本间基因表达水平具有明显差异;③差异分析结果显示,相对于低龄组,高龄组颗粒细胞中共有410个差异表达的mRNA,其中上调基因167个,下调基因243个,GO分析结果显示下调基因主要富集到胞吐作用调节、激素代谢过程等,GSEA分析结果显示高龄组颗粒细胞中与分泌相关的通路表达下调;④相对于低龄组,高龄组共检测到662个差异表达的长链非编码RNA,这部分长链非编码RNA直接调控的蛋白质编码基因为1772个,其中与差异表达基因交集59个。结果表明:高龄组颗粒细胞中与分泌相关的基因及通路表达下调,从而影响卵母细胞质量,同时这些表达下调的基因受到长链非编码RNA调控,因此长链非编码RNA的表达可能与年龄有关。BACKGROUND:The granulosa cell state greatly affects the quality of oocytes.As the increased proportion of aged women in assisted reproduction,granulosa cells from patients of different ages are examined at transcript levels in order to better assess oocyte quality.OBJECTIVE:To investigate the expression changes of mRNA and long non-coding RNA in granulosa cells from the young and aged patients.METHODS:Waste cumulus granulosa cells obtained during the assisted reproductive cycle.Young group was in 25-35 years old,and the aged group was in 38-45 years old.Granulosa cells collected from the young and aged females were analyzed using RNA sequencing,three replications for each group.RESULTS AND CONCLUSION:(1)The RNA sequencing analysis results showed that the average sequencing volume of samples was more than 14 G;the data quality Q30 after quality control was more than 93%;the average mapping rate of data was 98.4%,which indicates that the data had good quality.(2)The results of principal component analysis and correlation analysis showed that the samples of the aged group and the young group could be clearly distinguished.(3)The difference analysis results showed that compared with the young group,a total of 410 differentially expressed mRNAs were detected in the aged group(167 up-regulated and 243 down-regulated).GO analysis results showed that the down-regulated genes were mainly enriched in regulatedexocytosis and the emetabolicprocess.GSEA analysis results showed that secretion-related pathways in the aged group were down-regulated.(4)Compared with the young group,662 differentially expressed long non-coding RNAs were detected in the aged group,and 1772 protein-coding genes were directly regulated by these long non-coding RNAs,among which 59 genes overlaped with differentially expressed genes.The results showed that the expression of secretion-related genes and pathways in granulosa cells of the aged group was down-regulated,thus affecting oocyte quality.At the same time,these down-regulated genes were regulated

关 键 词：年龄 颗粒细胞 卵母细胞 全转录组 差异基因 长链非编码基因 

分 类 号：R459.9[医药卫生—治疗学] R318[医药卫生—临床医学] R714.8