Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematicsin addressing challenges in the meta-data era  

作　　者：Jian-Yu Jiao Rashidin Abdugheni Dao-Feng Zhang Iftikhar Ahmed Mukhtiar Ali Maria Chuvochina Svetlana N.Dedysh Xiuzhu Dong Markus Göker Brian P.Hedlund Philip Hugenholtz Kamlesh Jangid Shuang-Jiang Liu Edward R.B.Moore Manik Prabhu Narsing Rao Aharon Oren Ramon Rossello-Mora Bhagwan Narayan Rekadwad Nimaichand Salam Wensheng Shu Iain C.Sutcliffe Wee Fei Aaron Teo Martha E.Trujillo Stephanus N.Venter William B.Whitman Guoping Zhao Wen-Jun Li 

机构地区：[1]State Key Laboratory of Biocontrol,Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory(Zhuhai),School of Life Sciences,Sun Yat-Sen University,Guangzhou 510275,China [2]State Key Laboratory of Desert and Oasis Ecology,Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands,Xinjiang Institute of Ecology and Geography,Chinese Academy of Sciences,Urumqi 830011,China [3]Jiangsu Province Engineering Research Center for Marine Bio-resources Sustainable Utilization&College of Oceanography,Hohai University,Nanjing 210024,China [4]National Culture Collection of Pakistan(NCCP),Land Resources Research Institute(LRRI),National Agricultural Research Centre(NARC),Islamabad 45500,Pakistan [5]The University of Queensland,School of Chemistry and Molecular Biosciences,Australian Centre for Ecogenomics,Queensland 4072,Australia [6]Winogradsky Institute of Microbiology,Research Center of Biotechnology,Russian Academy of Sciences,Moscow 117312,Russia [7]State Key Laboratory of Microbial Resources,Institute of Microbiology,Chinese Academy of Sciences,Beijing 100101,China [8]Leibniz Institute DSMZ-German Collection of Microorganisms and CellCultures,Braunschweig D-38124,Germany [9]Schoolof Life Sciences,University of Nevada,Las Vegas,NV89154,USA [10]Nevada Institute of Personalized Medicine,University of Nevada,Las Vegas,NV89154,USA [11]Bioenergy Group,MACS Collection of Microorganisms,Agharkar Research Institute,Pune 411004,India [12]State Key Laboratory of Microbial Technology,Shandong University,Qingdao 266237,China [13]Departmentof Infectious Disease,Institute for Biomedicine,and Culture Collection University of Gothenburg(CCUG),Institute for Biomedicine,Sahlgrenska Academy,University of Gothenburg,Gothenburg SE-40234,Sweden [14]Instituto de Ciencias Aplicadas,Facultadde Ingeniería,Universidad Autónoma de Chile,Talca 3460000,Chile [15]The Alexander Silberman Institute of Life Sciences,The Edmond J.Safra Campus,The Hebrew University of Jeru

出　　处：《National Science Review》2024年第7期286-298,共13页国家科学评论（英文版）

基　　金：supported by the National Key Research and Development Program of China(2021YFD1500300);the Key-Area Research and Development Program of Guangdong Province(2022B0202110001);the National Natural Science Foundation of China(92251302,32200007 and 32370011);the Guangdong Provincial Science and Technology Plan Project(2022A0505020001);the Xinjiang Uygur Autonomous Region Tianchi Talent Introduction Plan(‘TianChi Excellence Award for Young Doctoral Talents’)and the China Postdoctoral Science Foundation(2023M733725).

摘　　要：Prokaryotes are ubiquitous in the biosphere,important for human health and drive diverse biological and environmental processes.Systematics of prokaryotes,whose origins can be traced to the discovery of microorganisms in the 17th century,has transitioned from a phenotype-based classification to a more comprehensive polyphasic taxonomy and eventually to the current genome-based taxonomic approach.This transition aligns with a foundational shift from studies focused on phenotypic traits that have limited comparative value to those using genome sequences.In this context,Bergey's Manual of Systematics of Archaea and Bacteria(BMSAB)and Bergey's International Society for Microbial Systematics(BISMiS)play a pivotal role in guiding prokaryotic systematics.This review focuses on the historical development of prokaryotic systematics with a focus on the roles of BMSAB and BISMiS.We also explore significant contributions and achievements by microbiologists,highlight the latest progress in the field and anticipate challenges and opportunities within prokaryotic systematics.Additionally,we outline five focal points of BISMiS that are aimed at addressing these challenges.In conclusion,our collaborative effort seeks to enhance ongoing advancements in prokaryotic systematics,ensuring its continued relevance and innovative characters in the contemporary landscape of genomics and bioinformatics.

关 键 词：prokaryotic systematics Bergey's Manual of Systematics of Archaea and Bacteria(BMSAB) Bergey's International Society for Microbial Systematics(BISMiS) meta-data era 

分 类 号：Q93[生物学—微生物学]