Identification and construction of lncRNA-miRNA-mRNA ceRNA networks associated with temperature changes in Sebastiscus marmoratus  

在线阅读下载全文

作  者:Zhujun LI Chenyan SHOU Shaolei SUN Zhiqiang HAN Qi LIU 

机构地区:[1]Fishery College,Zhejiang Ocean University,Zhoushan 316000,China [2]Key Laboratory of Sustainable Utilization of Technology Research for Fisheries Resources of Zhejiang Province,Zhoushan 316021,China [3]Wuhan Onemore-tech Co.,Ltd.,Wuhan 430076,China

出  处:《Journal of Oceanology and Limnology》2024年第6期1957-1975,共19页海洋湖沼学报(英文)

基  金:Supported by the Zhejiang Provincial Natural Science Foundation of China(No.LR21D060003);the National Key Research and Development Program of China(No.2017YFA0604904)。

摘  要:Sebastiscus marmoratus is one of the ideal fish species for offshore breeding,and temperature changes directly affect its physiological process.We performed whole-transcriptome sequencing of the liver tissues of S.marmoratus under heat stress(25℃),normal condition(20℃,the control),and cold stress(15℃).A total of 376 differentially expressed genes(DEGs),147 differentially expressed lncRNAs(DELs),and 40 differentially expressed miRNAs(DEMis)were detected under heat stress;59 DEGs,59 DELs,and 44 DEMis were detected under cold stress.Furthermore,a competing endogenous RNA regulatory network for the functional interaction of lncRNA-miRNA-mRNA was constructed,and GO and KEGG enrichment analyses showed that genes involved in maintaining homeostasis or adjusting to stress and stimulation were strongly activated during heat stress.Including heat-shock protein-related genes Hsp70,FKBP4,and Hspa4a regulated by dre-mir-205-5p;energy metabolism-related genes GCK,g6pca,and RFK regulated by dre-miR-205-5p,dre-miR-145-5p,novel_441,TCONS_00023692,and tcon_00095578;and immune-related genes SCAF,NLRC3,per1b,herc4,MafG,and KLHL29 regulated by dre-miR-456,novel_640,novel_163,TCONS_00079377,TCONS_00063590,and TCONS_000605708.Our findings provide new insights into the adaptation of S.marmoratus to acute temperature changes.

关 键 词:Sebastiscus marmoratus differentially expressed gene(DEG) ceRNA network temperature change 

分 类 号:S917.4[农业科学—水产科学]

 

参考文献:

正在载入数据...

 

二级参考文献:

正在载入数据...

 

耦合文献:

正在载入数据...

 

引证文献:

正在载入数据...

 

二级引证文献:

正在载入数据...

 

同被引文献:

正在载入数据...

 

相关期刊文献:

正在载入数据...

相关的主题
相关的作者对象
相关的机构对象