TEGR:A comprehensive Ericaceae genome resource database  

作　　者：Xiaojing Wang Yunfeng Wei Zhuo Liu Tong Yu Yanhong Fu Xiaoming Song 

机构地区：[1]Institute of Agro-Bioengineering/The Key Laboratory of Plant Resources Conservation and Germplasm Innovation in the Mountainous Region(Ministry of Education)/College of Life Sciences,Guizhou University,Guiyang 550025,China [2]School of Life Sciences,North China University of Science and Technology,Tangshan 063210,China

出　　处：《Journal of Integrative Agriculture》2025年第3期1140-1151,共12页农业科学学报(英文版)

基　　金：supported by the National Natural Science Foundation of China(32260097);the National Guidance of Local Science and Technology Development Fund of China([2023]009)。

摘　　要：Ericaceae is a diverse family of flowering plants distributed nearly worldwide,and it includes 126 genera and more than 4,000 species.In the present study,we developed The Ericaceae Genome Resource(TEGR,http://www.tegr.com.cn)as a comprehensive,user-friendly,web-based functional genomic database that is based on 16 published genomes from 16 Ericaceae species.The TEGR database contains information on many important functional genes,including 763 auxin genes,2,407 flowering genes,20,432 resistance genes,617 anthocyanin-related genes,and 470 N^(6)-methyladenosine(m^(6)A)modification genes.We identified a total of 599,174 specific guide sequences for CRISPR in the TEGR database.The gene duplication events,synteny analysis,and orthologous analysis of the16 Ericaceae species were performed using the TEGR database.The TEGR database contains 614,821 functional genes annotated through the GO,Nr,Pfam,TrEMBL,and Swiss-Prot databases.The TEGR database provides the Primer Design,Hmmsearch,Synteny,BLAST,and JBrowse tools for helping users perform comprehensive comparative genome analyses.All the high-quality reference genome sequences,genomic features,gene annotations,and bioinformatics results can be downloaded from the TEGR database.In the future,we will continue to improve the TEGR database with the latest data sets when they become available and to provide a useful resource that facilitates comparative genomic studies.

关 键 词：TEGR ERICACEAE gene functional annotation m^(6)A CRISPR bioinformatic tools 

分 类 号：TP3[自动化与计算机技术—计算机科学与技术]