鲽科10种鱼类核糖体ITS2序列比较分析  

Comparative Analysis of Ribosomal ITS2 Sequences in 10 Species of Pleuronectidae

作　　者：杨敏[1,2] 孔晓瑜 时伟[1] 龚理[3] YANG Min;KONG Xiao-Yue;SHI Wei;GONG Li(CAS Key Laboratory of Tropical Marine Bio-resources and Ecology,South China Sea Institute of Oceanology,Chinese Academy of Sciences,Guangzho,u 510301;University of Chinese Academy of Sciences,Beijing 100049;National Engineering Researeh Center for Facilitated Marine Aquaculture,Marine Science and Technology College,Zhejiang Ocean University,Zhoushan 316022,China)

机构地区：[1]中国科学院热带海洋生物资源与生态重点实验室,中国科学院南海海洋研究所,广州510301 [2]中国科学院大学,北京100049 [3]浙江海洋大学国家海洋设施养殖工程技术研究中心,海洋科学与技术学院,舟山316022

出　　处：《动物学杂志》2018年第6期938-950,共13页Chinese Journal of Zoology

基　　金：国家自然科学基金项目(No.31272273).

摘　　要：为了解鲽科鱼类ITS2序列的多态性特征,本研究获得了鲽科10种鱼类310条ITS2序列,长度在419～486 bp之间。种内序列长度差异最小的为粒鲽(Clidoderma asperrima)(419～420 bp)和太平洋拟庸鲽(Hippoglossoides elassodon)(419～420 bp),其次为北岩鲽(Lepidopsetta polyxystra)(447～452 bp)和刺黄盖鲽(Limanda aspera)(457～463 bp),松木高眼鲽(Cleisthenes pinetorum)(452～462 bp)和圆斑星鲽(Verasper variegatus)(465～479 bp)的种内序列差异分别为10 bp和14 bp;其余4种鱼类根据长度差异(14～32 bp)分型为长(A型)、短(B型)序列类型,同时检测存在重组类型(R型),其中长度差异最大的是钝吻黄盖鲽(Pseudopleuronectes yokohamae)(454～486 bp),其次为尖吻黄盖鲽(P. herzensteini)(433～458 bp)、虫鲽(Eopsetta grigorjewi)(420～439 bp)、星突江鲽(Platichthys stellatus)(466～480 bp)。通过双参数模型(K2P)计算遗传距离可见,种内遗传距离多集中于0.002～0.027之间,仅星突江鲽和尖吻黄盖鲽因类型差异导致较高数值(0.043和0.053);不同物种间遗传距离在0.046～0.180之间。10种鱼类ITS2的GC含量为63.95%～70.16%;9种鱼类的二级结构均为具有5个分支(HelixⅠ～Ⅴ)的闭合环状结构,仅圆斑星鲽中由于存在HelixⅣ变异形成HelixⅣ-a和HelixⅣ-b而具有6个分支。基于ITS2构建的鲽科10种鱼类的系统进化树显示,不同种鱼类的克隆序列均单独聚支。序列的多态性特征分析表明,在具有不同序列类型的虫鲽、星突江鲽、尖吻黄盖鲽和钝吻黄盖鲽4种鲽科鱼类中,ITS2以非协同进化的方式存在,而其他6种鱼类为协同进化;虽然存在种间K2P遗传距离小于种内的个例,但ITS2在属间不同物种的区分上具有适用性。本研究结果丰富了鲽形目鱼类的ITS2数据,也将为鱼类的核糖体RNA序列多态性的研究提供科学依据。The main objective of this study was to better understand the characteristics of ITS2sequence polymorphism in Pleuronectidae species.We cloned and sequenced ITS2fragments in 10species of Pleuronectidae,and then performed further analyses,including analysis of polymorphic statistics,calculation of Kimura-2-parameter (K2P)genetic distances,prediction of secondary structure and minimum free energy, and determination of recombinants.Finally,the phylogenetic relationship among different species was constructed by Maximum likelihood (ML)and Bayesian Inference (BI)method with Bothus myriaster as outgroup species.A total of 310sequences were obtained from 10species of Pleuronectidae.Among 6of 10 species,Clidoderma asperrima (419-420bp)and Hippoglossoides elassodon (419-420bp)have the lowest variation in length,comparing to Lepidopsetta polyxystra (447-452bp)and Limanda aspera (457- 463bp)with 5bp and 6bp variations,and Cleisthenes pinetorum (452-462bp)and Verasper variegatus (465-479bp)with 10bp and 14bp variations.For other four species,the biggest length variation of each species is 14-32bp,resulting in longer,shorter or recombinant sequence types that are classified as types A, B and R.The biggest length variation occurs in Pseudopleuronectes yokohamae (454-486bp),then Ps. herzensteini (433-458bp),Eopsetta grigorjewi (420-439bp),and Platichthys stellatus (466-480bp) (Table 1).The K2P genetic distances of intra-species ranges from 0.002to 0.027,except the high values in PI. stellatus and Ps.herzensteini,up to 0.043and 0.053,respectively;while the genetic distance of inter-species ranges from 0.046to 0.180(Table 2).The GC contents of ITS2in the 10species range from 63.95%to 70.16%(Table 1).The secondary structure has a uniform loop structure with five branches Helix I -V, except for E variegatus with Helix iV-a and IV-b (Fig.2).The phylogenetic trees constructed based on ITS2 sequences of 10Pleuronectidae species show that the different clones of each species are clustered together (Fig.3).According to the ITS2sequence

关 键 词：鲽科 ITS2 多态性 二级结构 协同进化 非协同进化 

分 类 号：Q953[生物学—动物学]