FungalTraits:a user-friendly traits database of fungi and fungus-like stramenopiles  

作　　者：Sergei Põlme Kessy Abarenkov RHenrik Nilsson Björn D.Lindahl Karina Engelbrecht Clemmensen Havard Kauserud Nhu Nguyen Rasmus Kjøller Scott T.Bates Petr Baldrian Tobias Guldberg Frøslev Kristjan Adojaan Alfredo Vizzini Ave Suija Donald Pfister Hans-Otto Baral Helle Järv Hugo Madrid Jenni Nordén Jian-Kui Liu Julia Pawlowska Kadri Põldmaa Kadri Pärtel Kadri Runnel Karen Hansen Karl-Henrik Larsson Kevin David Hyde Marcelo Sandoval-Denis Matthew E.Smith Merje Toome-Heller Nalin N.Wijayawardene Nelson Menolli Jr Nicole K.Reynolds Rein Drenkhan Sajeewa S.N.Maharachchikumbura Tatiana B.Gibertoni Thomas Læssøe William Davis Yuri Tokarev Adriana Corrales Adriene Mayra Soares Ahto Agan Alexandre Reis Machado Andrés Argüelles-Moyao Andrew Detheridge Angelina de Meiras-Ottoni Annemieke Verbeken Arun Kumar Dutta Bao-Kai Cui C.K.Pradeep César Marín Daniel Stanton Daniyal Gohar Dhanushka N.Wanasinghe Eveli Otsing Farzad Aslani Gareth W.Griffith Thorsten H.Lumbsch Hans-Peter Grossart Hossein Masigol Ina Timling Inga Hiiesalu Jane Oja John Y.Kupagme József Geml Julieta Alvarez-Manjarrez Kai Ilves Kaire Loit Kalev Adamson Kazuhide Nara Kati Küngas Keilor Rojas-Jimenez Krišs Bitenieks Laszlo Irinyi LászlóGNagy Liina Soonvald Li-Wei Zhou Lysett Wagner M.Catherine Aime MaarjaÖpik María Isabel Mujica Martin Metsoja Martin Ryberg Martti Vasar Masao Murata Matthew PNelsen Michelle Cleary Milan C.Samarakoon Mingkwan Doilom Mohammad Bahram Niloufar Hagh-Doust Olesya Dulya Peter Johnston Petr Kohout Qian Chen Qing Tian Rajasree Nandi Rasekh Amiri Rekhani Hansika Perera Renata dos Santos Chikowski Renato L.Mendes-Alvarenga Rob 

机构地区：[1]Institute of Ecology and Earth Sciences,University of Tartu,14A Ravila,50411 Tartu,Estonia [2]Natural History Museum,University of Tartu,46 Vanemuise Str,51003 Tartu,Estonia [3]Gothenburg Global Biodiversity Centre,Box 461,40530 Gothenburg,Sweden [4]Department of Biological and Environmental Sciences,University of Gothenburg,Gothenburg,Sweden [5]Department of Soil and Environment,Swedish University of Agricultural Sciences,Box 7014,75007 Uppsala,Sweden [6]Department of Forest Mycology and Plant Pathology,Swedish University of Agricultural Sciences,Box 7026,75007 Uppsala,Sweden [7]Section for Genetics and Evolutionary Biology(EvoGene),Department of Biosciences,University of Oslo,P.O.Box 1066,Blindern,NO-0316 Oslo,Norway [8]University of Hawaiʻi at Mānoa,3190 Maile Way,St.John 102,Honolulu,HI,USA [9]Department of Biology,University of Copenhagen,Universitetsparken 15,2100 CopenhagenØ,Denmark [10]Purdue University Northwest,Westville,IN 46391,USA [11]Institute of Microbiology,Czech Academy of Sciences,Videnska 1083,14220 Praha 4,Czech Republic [12]GLOBE Institute,University of Copenhagen,Øster Farimagsgade 5,KH7.2.32,1353 Copenhagen,Denmark [13]Dipartimento di Scienze della Vita e Biologia dei Sistemi,Universitàdi Torino,Viale Mattioli 25,10125 Torino,Italy [14]Department of Organismic and Evolutionary Biology and Farlow Library and Herbarium,Harvard University,22 Divinity Ave,Cambridge,MA 02138,USA [15]Blaihofstr.42,72074 Tübingen,Germany [16]SYNLAB Estonia,Veerenni 53a,Tallinn 11313,Estonia [17]Escuela de Tecnología Médica,Universidad Santo Tomás,Los Carreras 753,Osorno,Chile [18]Centro de Genómica y Bioinformática,Universidad Mayor,Camino La Pirámide 5750,Huechuraba,Santiago,Chile [19]Norwegian Institute for Nature Research(NINA),Sognsveien 68,0855 Oslo,Norway [20]School of Life Science and Technology,University of Electronic Science and Technology of China,Chengdu 611731,People’s Republic of China [21]Evolutionary Biology,Faculty of Biology,Biological and Chemical Research Centre,University of W

出　　处：《Fungal Diversity》2020年第6期I0001-I0016,共16页真菌多样性（英文）

基　　金：Estonian Science Foundation grants PSG136,PRG632,PUT1170;the University of Tartu(PLTOM20903);the European Regional Development Fund(Centre of Excellence EcolChange).

摘　　要：The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies.Over the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats.Yet,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging.In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels.Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,respectively.This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental stud-ies.In order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences.On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold.

关 键 词：Fungal traits Trophic modes Function GUILD BIOINFORMATICS High-throughput sequencing Community ecology 

分 类 号：Q94[生物学—植物学]