PSEUDOKNOTS

作品数：3被引量：1H指数：1
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相关领域：生物学更多>>
相关作者：黄旭慧蒋晓舟骆志刚丁凡更多>>
相关机构：国防科学技术大学更多>>
相关期刊：《Progress in Natural Science:Materials International》《Biophysics Reports》《Tsinghua Science and Technology》更多>>
相关基金：国家自然科学基金更多>>
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Prediction of RNA secondary structure with pseudoknots using coupled deep neural networks被引量：1
《Biophysics Reports》2020年第4期146-154,共9页Kangkun Mao Jun Wang Yi Xiao 
the National Natural Science Foundation of China(31570722).
Noncoding RNAs play important roles in cell and their secondary structures are vital for understanding their tertiary structures and functions.Many prediction methods of RNA secondary structures have been proposed but...
关键词：RNA secondary structure prediction Deep learning Minimum free energy 
Using Folding Ensemble and Stem Probability Maximization Methods to Predict RNA H-Type Pseudoknots
《Tsinghua Science and Technology》2012年第6期691-700,共10页Junilda Spirollari Shawn Xiong Wang Jason T.L. Wang 
We present in this paper an ab initio method, named KnotFold, for RNA H-type pseudoknot prediction. Our method employs an ensemble of RNA folding tools and a filtering heuristic to generate a set of pseudoknot-free st...
关键词：RNA structure PSEUDOKNOTS tool ensemble 
Prediction for RNA planar pseudoknots
《Progress in Natural Science:Materials International》2007年第6期717-724,共8页Li Hengwu Zhu Daming Liu Zhendong Li Hong 
Supported by National Natural Science Foundation of China (Grant Nos 60573024 and 60573181);the Research Project of Shandong EconomicUniversity (01610784);NSF of Shandong Provice (2005BS01014)
Based on m-stems and semi-extensible structure, a model is presented to represent RNA planar pseudoknots, and corresponding dynamic programming algorithm is designed and implemented to predict arbitrary planar pseudok...
关键词：ALGORITHM RNA secondary structure PSEUDOKNOT dynamic programming 
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