PHYLODYNAMICS

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Comparing the transmission potential from sequence and surveillance data of 2009 North American influenza pandemic waves
《Infectious Disease Modelling》2023年第1期240-252,共13页Venkata R.Duvvuri Joseph T.Hicks Lambodhar Damodaran Martin Grunnill Thomas Braukmann Jianhong Wu Jonathan B.Gubbay Samir N.Patel Justin Bahl 
National Institutes of Health(NIH)Centers for Excellence in Influenza Research and Surveillance(contract#HHSN272201400006C);National Institute of Allergy and Infectious Diseases,National Institutes of Health,Department of Health and Human Services,under Contract No.75N93021C00018(NIAID Centers of Excellence for Influenza Research and Response,CEIRR)。
Technological advancements in phylodynamic modeling coupled with the accessibility of real-time pathogen genetic data are increasingly important for understanding the infectious disease transmission dynamics.In this s...
关键词：PHYLODYNAMICS Pandemic 2009 H1N1 Reproduction number Coalescent growth models Birth-death models Pathogen sequence data Public health 
Pitfalls of barcodes in the study of worldwide SARSCoV-2 variation and phylodynamics
《Zoological Research》2021年第1期87-93,共7页Jacobo Pardo-Seco Alberto Gómez-Carballa Xabier Bello Federico Martinón-Torres Antonio Salas 
This study was supported by the GePEM(Instituto de Salud Carlos III(ISCIII)/PI16/01478/Cofinanciado FEDER);DIAVIR(Instituto de Salud Carlos III(ISCIII)/DTS19/00049/Cofinanciado FEDER;Proyecto de Desarrollo Tecnológico en Salud),Resvi-Omics(Instituto de Salud Carlos III(ISCIII)/PI19/01039/Cofinanciado FEDER),BI-BACVIR(PRIS-3;Agencia de Conocimiento en Salud(ACIS)-Servicio Gallego de Salud(SERGAS)-Xunta de Galicia;Spain),Programa Traslaciona Covid-19(ACIS-Servicio Gallego de Salud(SERGAS)-Xunta de Galicia;Spain)and Axencia Galega de Innovación(GAIN;IN607B 2020/08-Xunta de Galicia;Spain)to A.S.;and ReSVinext(Instituto de Salud Carlos III(ISCIII)/PI16/01569/Cofinanciado FEDER),and Enterogen(Instituto de Salud Carlos III(ISCIII)/PI19/01090/Cofinanciado FEDER)to F.M.-T;We gratefully acknowledge GISAID and contributing laboratories(Supplementary Table S1)for giving us access to the SAR-CoV-2 genomes used in the present study.
DEAR EDITOR,Analysis of SARS-CoV-2 genome variation using a minimal number of selected informative sites conforming a genetic barcode presents several drawbacks.We show that purely mathematical procedures for site sel...
关键词：dynamics PROPERLY purely 
Phylodynamic applications in 21^(st)century global infectious disease research
《Global Health Research and Policy》2017年第1期244-253,共10页Brittany D Rife Carla Mavian Xinguang Chen Massimo Ciccozzi Marco Salemi Jae Min Mattia CF Prosperi 
Background:Phylodynamics,the study of the interaction between epidemiological and pathogen evolutionary processes within and among populations,was originally defined in the context of rapidly evolving viruses and used...
关键词：Molecular epidemiology PHYLODYNAMICS PHYLOGEOGRAPHY Comparative phylogenetics HIV Zika DENGUE WGS MRSA 
The global spread of Middle East respiratory syndrome:an analysis fusing traditional epidemiological tracing and molecular phylodynamics被引量：1
《Global Health Research and Policy》2016年第1期116-129,共14页Jae Min Eleonora Cella Massimo Ciccozzi Antonello Pelosi Marco Salemi Mattia Prosperi 
supported by the Virogenesis project;funding from the European Union’s Horizon 2020 research and innovation program under grant agreement No.634650.
Background: Since its discovery in 2012, over 1700 confirmed cases of Middle East Respiratory Syndrome (MERS)have been documented worldwide and more than a third of those cases have died. While the greatest number ofc...
关键词：Middle East Respiratory Syndrome CORONAVIRUS Epidemiology PHYLODYNAMICS 
Enigmatic origin of hepatitis B virus:An ancient travelling companion or a recent encounter?被引量：3
《World Journal of Gastroenterology》2014年第24期7622-7634,共13页Gianguglielmo Zehender Erika Ebranati Elena Gabanelli Chiara Sorrentino Alessra Lo Presti Elisabetta Tanzi Massimo Ciccozzi Massimo Galli 
Hepatitis B virus(HBV)is the leading cause of liver disease and infects an estimated 240 million people worldwide.It is characterised by a high degree of genetic heterogeneity because of the use of a reverse transcrip...
关键词：Hepatitis B virus genotypes and subgenotypes PHYLOGEOGRAPHY Population dynamics and epidemics Molecular epidemiology Hepatitis B virus phylodynamics 
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