GENOME-WIDE

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Genome-wide circular RNAs signatures involved in sexual maturation and its heterosis in chicken
《Journal of Integrative Agriculture》2025年第2期697-711,共15页Yuanmei Wang Jingwei Yuan Yanyan Sun Aixin Ni Jinmeng Zhao Yunlei Li Panlin Wang Lei Shi Yunhe Zong Pingzhuang Ge Shixiong Bian Hui Ma Jilan Chen 
funded by the National Natural Science Foundation of China(32172721);the China Agriculture Research System(CARS-40);the Central Publicinterest Scientific Institution Basal Research Fund,China(2021-YWF-ZYSQ-12);the Agricultural Science and Technology Innovation Program of Chinese Academy of Agricultural Sciences(ASTIP-IAS04)。
Sexual maturation heterosis has been widely exploited in animal crossbreeding.However,the underlying mechanism has been rarely explored in chicken.In the present study,we performed the reciprocal crossing between Whit...
关键词：CHICKEN sexual maturation HETEROSIS OVARY circRNA 
Genome-wide investigation of defensin genes in apple(Malus×domestica Borkh.) and in vivo analyses show that MdDEF25 confers resistance to Fusarium solani
《Journal of Integrative Agriculture》2025年第1期161-175,共15页Mengli Yang Jian Jiao Yiqi Liu Ming Li Yan Xia Feifan Hou Chuanmi Huang Hengtao Zhang Miaomiao Wang Jiangli Shi Ran Wan Kunxi Zhang Pengbo Hao Tuanhui Bai Chunhui Song Jiancan Feng Xianbo Zheng 
supported by a project grant from the Key Research and Development and Promotion Projects of Henan Province,China(212102110113);the Special Fund for Henan Agriculture Research System,China(HARS-22-09-Z2).
Apple replant disease is a complex soil syndrome that occurs when the same fields are repeatedly utilized for apple orchard cultivation.It can be caused by various pathogens,and Fusarium solani is the main pathogen.Fu...
关键词：APPLE Fusarium solani DEFENSIN resistance replant disease 
Genome-wide identification and characterization of putative effectors in Heterodera schachtii that suppress plant immune response
《Journal of Integrative Agriculture》2025年第1期196-208,共13页Ke Yao Menghan Zhang Jianjun Xu Deliang Peng Wenkun Huang Ling'an Kong Shiming Liu Guangkuo Li Huan Peng 
supported by the Open Fund of the Key Laboratory of Integrated Pest Management on Crop in Northwestern Oasis,Ministry of Agriculture and Rural Affairsof China(KFJJ202101);the National KeyR&D Program of China(2021YFD1400100);the National Natural Science Foundation of China(31972247);the Tianchi Talent Introduction Program in Xinjiang Uygur Autonomous Region,China and the Science and Technology Innovation Project of the Chinese Academy of Agricultural Sciences.
The sugar beet cyst nematode(Heterodera schachtii) is one of the most destructive pathogens in sugar beet production, which causes serious economic losses every year. Few molecular details of effectors of H. schachtii...
关键词：sugar beet cyst nematode Heterodera schachti effector-triggered immunity hypersensitive response EFFECTOR 
Genome-wide identification,molecular evolution,and functional characterization of fructokinase gene family in apple reveal its role in improving salinity tolerance
《Journal of Integrative Agriculture》2024年第11期3723-3736,共14页Jing Su Lingcheng Zhu Pingxing Ao Jianhui Shao Chunhua Ma 
supported by the Yunnan Provincial Science and Technology Department Agriculture Joint Project,China(202301BD070001-020)。
Fructokinase(FRK)is a regulator of fructose signaling in plants and gateway proteins that catalyze the initial step in fructose metabolism through phosphorylation.Our previous study demonstrated that MdFRK2 protein ex...
关键词：APPLE FRUCTOKINASE evolutionary patterns MdFRK2 salinity tolerance 
Genome-wide identification of the pectate lyase(PEL)gene family members in Malvaceae,and their contribution to cotton fiber quality被引量：1
《Journal of Integrative Agriculture》2024年第10期3264-3282,共19页Qian Deng Zeyu Dong Zequan Chen Zhuolin Shi Ting Zhao Xueying Guan Yan Hu Lei Fang 
supported by the Ministry of Agriculture and Rural Affairs,China(2023ZD04039-01);the National Natural Science Foundation of China(32172008);the Leading Innovative and Entrepreneur Team Introduction Program of Zhejiang,China(2019R01002)。
Pectin is a major constituent of the plant cell wall.Pectate lyase(PEL,EC 4.2.2.2)uses anti-β-elimination chemistry to cleave theα-1,4 glycosidic linkage in the homogalacturonan region of pectin.However,limited info...
关键词：MALVACEAE pectate lyase(PEL) Gossypium species fiber quality 
Genome-wide and candidate gene association studies identify BnPAP17 as conferring the utilization of organic phosphorus in oilseed rape
《Journal of Integrative Agriculture》2024年第4期1134-1149,共16页Ping Xu Hao Li Haiyuan Li Ge Zhao Shengjie Dai Xiaoyu Cui Zhenning Liu Lei Shi Xiaohua Wang 
financially supported by the National Natural Science Foundation of China(32201868 and 32001575)。
Phosphorus(P)is essential for living plants,and P deficiency is one of the key factors limiting the yield in rapeseed production worldwide.As the most important organ for plants,root morphology traits(RMTs)play a key ...
关键词：genome-wide association studies(GWAS) root morphology traits(RMTs) organic phosphorus(Po) oilseed rape BnPAP17 
Genome-wide identification of the CONSTANS-LIKE(COL)family and mechanism of fruit senescence regulation by PpCOL8 in sand pear(Pyrus pyrifolia)
《Journal of Integrative Agriculture》2024年第4期1222-1237,共16页Yue Xu Shurui Song Huiying Wang Xilong Cao Xinran Zhao Wenli Wang Liyue Huo Yawei Li Misganaw Wassie Bin Lu Liang Chen Haiyan Shi 
supported by the National Natural Science Foundation of China(32272654);the Natural Science Foundation of Hebei Province China(C2023204016);the Hebei Province Introduced Overseas-Scholar Fund China(C20220361);the S&T Program of Hebei China(20326330D);the Hebei Province Outstanding Youth Fund China(2016,2019)。
Pyrus pyrifolia Nakai‘Whangkeumbae'is a sand pear fruit with excellent nutritional quality and taste.However,the industrial development of pear fruit is significantly limited by its short shelf life.Salicylic acid(SA...
关键词：Pyrus pyrifolia CONSTANS-LIKE gene salicylic acid fruit senescence MADS 
Assessing the conservation impact of Chinese indigenous chicken populations between ex-situ and in-situ using genome-wide SNPs
《Journal of Integrative Agriculture》2024年第3期975-987,共13页Wenting Li Chaoqun Gao Zhao Cai Sensen Yan Yanru Lei Mengya Wei Guirong Sun Yadong Tian Kejun Wang Xiangtao Kang 
supported by the Key Research Project of the Shennong Laboratory,Henan Province,China(SN012022-05);the National Natural Science Foundation of China(32272866);the Young Elite Scientists Sponsorship Program by CAST(2021QNRC001);the Starting Foundation for Outstanding Young Scientists of Henan Agricultural University,China(30500664&30501280)。
Conservation programs require rigorous evaluation to ensure the preservation of genetic diversity and viability of conservation populations. In this study, we conducted a comparative analysis of two indigenous Chinese...
关键词：genome-wide SNPs CONSERVATION genetic diversity ex-situ IN-SITU 
Immunogenetic basis of chicken’s heterophil to lymphocyte ratio revealed by genome-wide indel variants analysis
《Journal of Integrative Agriculture》2023年第9期2810-2823,共14页ZHANG Jin WANG Jie WANG Qiao CUI Huan-xian DING Ji-qiang WANG Zi-xuan Mamadou Thiam LI Qing-he ZHAO Gui-ping 
supported by the grants from the National Natural Science Foundation of China(32072708);the National Key R&D Program of China(2018YFE0128000);the Major Scientific Research Projects of Chinese Academy of Agricultural Sciences(CAAS-ZDRW202005).
Enhancing host immunity is an effective way to reduce morbidity in chickens.Heterophil to lymphocyte ratio(H/L)is associated with host disease resistance in birds.Chickens with different H/L levels show different dise...
关键词：H/L ratio heterophil INDEL selective sweep GWAS 
Genome-wide identification and function analysis of the sucrose phosphate synthase MdSPS gene family in apple被引量：4
《Journal of Integrative Agriculture》2023年第7期2080-2093,共14页ZHANG Li-hua ZHU Ling-cheng XU Yu LÜLong LI Xing-guo LI Wen-hui LIU Wan-da MA Feng-wang LI Ming-jun HAN De-guo 
supported by the National Natural Science Foundation of China (32172521);the Excellent Youth Science Foundation of Heilongjiang Province,China (YQ2023C006);the Talent Introduction Program of Northeast Agricultural University of China;the Collaborative Innovation System of the Agricultural Bio-economy in Heilongjiang Province,China
Sucrose phosphate synthase(SPS)is a rate-limiting enzyme that works in conjunction with sucrose-6-phosphate phosphatase(SPP)for sucrose synthesis,and it plays an essential role in energy provisioning during growth and...
关键词：APPLE sucrose phosphate synthase evolutionary pattern expression profile sugar accumulation 
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