PROTEIN_FOLDING

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Protein Structure Prediction:Challenges,Advances,and the Shift of Research Paradigms被引量：2
《Genomics, Proteomics & Bioinformatics》2023年第5期913-925,共13页Bin Huang Lupeng Kong Chao Wang Fusong Ju Qi Zhang Jianwei Zhu Tiansu Gong Haicang Zhang Chungong Yu Wei-Mou Zheng Dongbo Bu 
the National Key R&D Program of China(Grant No.2020YFA0907000)lthe National Natural Science Foundation of China(Grant Nos.32271297,62072435,31770775,and 31671369)for providing financial support for this study and publication charges.
Protein structure prediction is an interdisciplinary research topic that has attracted researchers from multiple fields,including biochemistry,medicine,physics,mathematics,and computer science.These researchers adopt ...
关键词：Protein folding Protein structure prediction Deep learning TRANSFORMER Language model 
A Quasi-physical Algorithm for the Structure Optimization in an Off-lattice Protein Model被引量：1
《Genomics, Proteomics & Bioinformatics》2006年第1期61-66,共6页Jing-Fa Liu Wen-Qi Huang 
In this paper, we study an off-lattice protein AB model with two species of monomers, hydrophobic and hydrophilic, and present a heuristic quasi-physical algorithm. First, by elaborately simulating the movement of the...
关键词：protein folding off-lattice model quasi-physical algorithm off-trap strategy 
A Branch and Bound Algorithm for the Protein Folding Problem in the HP Lattice Model
《Genomics, Proteomics & Bioinformatics》2005年第4期225-230,共6页Mao Chen Wen-Qi Huang 
supported by the National Natural Science Foundation of China(No.10471051);the National Basic Research Program(973 Program)of China(No.2004CB318000)
A branch and bound algorithm is proposed for the two-dimensional protein folding problem in the HP lattice model. In this algorithm, the benefit of each possible location of hydrophobic monomers is evaluated and only ...
关键词：protein folding HP model branch and bound LATTICE 
Fast Tree Search for A Triangular Lattice Model of Protein Folding
《Genomics, Proteomics & Bioinformatics》2004年第4期245-252,共8页XiaomeiLi NengchaoWang 
Using a triangular lattice model to study the designability of proteinfolding, we overcame the parity problem of previous cubic lattice model and enumerated all thesequences and compact structures on a simple two-dime...
关键词：triangular lattice model protein folding fast search tree DESIGNABILITY 
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