METAGENOME

作品数：80被引量：217H指数：7
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相关作者：张钫赵寿元赵方庆更多>>
相关机构：复旦大学中国科学院辽宁省肿瘤医院东南大学更多>>
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Insights into the biogenic amine-generating microbes during two different types of soy sauce fermentation as revealed by metagenome-assembled genomes
《Food Science and Human Wellness》2025年第3期998-1007,共10页Guiliang Tan Yi Wang Min Hu Xueyan Li Xiangli Li Ziqiang Pan Mei Li Lin Li Ziyi Zheng Lei Shi 
supported by the Natural Science Foundation of Guangdong Province(2022A1515012158);the National Science Foundation of China(41977138);the Construction Project of Teaching Quality and Teaching Reform in Guangdong Province(SJD202001);the General University Project of Guangdong Provincial Department of Education(2021KCXTD070 and 2021ZDZX4072);the Key Project of Social Welfare and Basic Research of Zhongshan City(2020B2010);the Start-up Fund from the Zhongshan Institute at the University of Electronic Science and Technology in China(419YKQN12)。
In-depth knowledge of the microbes responsible for biogenic amine(BA)production during soy sauce fermentation remains limited.Herein,the variations in the BA profiles,microbial communities,and microbes involved in BA ...
关键词：Soy sauce fermentation Biogenic amine Amine-producing genes Metagenome-assembled genomes 
Arbuscular mycorrhizal fungi promote functional gene regulation of phosphorus cycling in rhizosphere microorganisms of Iris tectorum under Cr stress
《Journal of Environmental Sciences》2025年第5期187-199,共13页Sixi Zhu Huan Mao Suxia Sun Xiuqin Yang Wei Zhao Luying Sheng Zhongbing Chen 
supported by 2024 Guizhou Basic Research Plan(Natural Science)Project,China(Foundation of Guizhou science cooperation-ZK[2024]General 490);the National Natural Science Foundation of China(No.31560107).
The mutualistic symbiotic system formed by clumping arbuscular mycorrhizal fungi(AMF)and plants can remediate heavy metal-contaminated soils.However,the specific mechanisms underlying the interaction between AMF and i...
关键词：METAGENOME Arbuscular mycorrhizal fungi PHOSPHORUS Iris tectorum CR 
Nitrogen-cycling processes under long-term compound heavy metal(loids)pressure around a gold mine:Stimulation of nitrite reduction
《Journal of Environmental Sciences》2025年第1期571-581,共11页Xuesong Hu Xiaoxia Liu Shuo Zhang Caihong Yu 
supported by the National Natural Science Foundation of China(No.41977029).
Mining and tailings deposition can cause serious heavy metal(loids)pollution to the surrounding soil environment.Soil microorganisms adapt their metabolism to such conditions,driving alterations in soil function.This ...
关键词：N cycle Nitrite reduction Nitrite reductase METAGENOME Key species 
The way to uncovering and utilizing marine microbial resources
《Engineering Microbiology》2024年第4期79-81,共3页Zhi-Feng Zhang Meng Li 
This work was financially supported by the National Key Re-search and Development Program of China(2022YFA0912200);Na-tional Natural Science Foundation of China(32225003,32393970,32393971);Guangdong Major Project of Basic and Applied Basic Re-search(2023B0303000017);Shenzhen Medical Research Fund(no.B2301005);Shenzhen University 2035 Program for Excellent Research(2022B002);research funds from Key Laboratory of Marine Micro-biome Engineering of Guangdong Higher Education Institutes and the Synthetic Biology Research Center of Shenzhen University.
Recently,Chen et al.published their breakthrough results on a marine microbial genomic catalog and genetic potentials in bioprospecting in Nature,providing unprecedented opportunities for development and utilization o...
关键词：METAGENOME MAG Global ocean microbiome genome catalogue CRISPR-Cas9 Antimicrobial peptide PETases 
Impact of database choice and confidence score on the performance of taxonomic classification using Kraken2
《aBIOTECH》2024年第4期465-475,共11页Yunlong Liu Morteza H.Ghaffari Tao Ma Yan Tu 
supported by the Central Public-Interest Scientific Institution Basal Research Fund of the Chinese Academy of Agricultural Sciences(Y2022QC10);Agricultural Sciences and Technology Innovation Program of the Chinese Academy of Agricultural Sciences(CAAS-IFRZDRW202404,CAAS-ASTIP-2023-IFR-04).
Accurate taxonomic classification is essential to understanding microbial diversity and function through metagenomic sequencing.However,this task is complicated by the vast variety of microbial genomes and the computa...
关键词：METAGENOME Taxonomic classification Kraken2 Reference database Confidence score 
Biocontrol agents modulate phyllosphere microbiota interactions against pathogen Pseudomonas syringae
《Environmental Science and Ecotechnology》2024年第5期309-317,共9页Zhaoyue Yang Tianbo Liu Jianqiang Fan Yiqiang Chen Shaolong Wu Jingjing Li Zhenghua Liu Zhendong Yang Liangzhi Li Suoni Liu Hongwu Yang Huaqun Yin Delong Meng Qianjun Tang 
supported by the Key Project of Science and Technology Project of China National Tobacco Corporation(110202101027)[LS-11];the Key Research Project of Hunan Province(2023NK2019);the Natural Science Foundation of Changsha(kq2202089);the International Scientific and Technological Cooperation Base of Hunan(2018WK4019).
The pathogen Pseudomonas syringae,responsible for a variety of diseases,poses a considerable threat to global crop yields.Emerging biocontrol strategies employ antagonistic microorganisms,utilizing phyllosphere microe...
关键词：Biological control METAGENOME TRANSCRIPTOME Community structure Pathogen resistance 
Rumen metagenome reveals the mechanism of mitigation methane emissions by unsaturated fatty acid while maintaining the performance of dairy cows
《Animal Nutrition》2024年第3期296-308,共13页Zhantao Yang Yuhui Zheng Siyuan Liu Tian Xie Qianqian Wang Zhonghan Wang Shengli Li Wei Wang 
supported by the National Key R&D Program of China (No.2022YFD1301001).
Dietary fat content can reduce the methane production of dairy cows;however,the relevance fatty acid(FA)composition has towards this inhibitory effect is debatable.Furthermore,in-depth studies elucidating the effects ...
关键词：Methane emission Rumen metagenome Dairy cow Unsaturated fatty acid 
Hidden Links Between Skin Microbiome and Skin Imaging Phenome
《Genomics, Proteomics & Bioinformatics》2024年第4期47-58,共12页Mingyue Cheng Hong Zhou Haobo Zhang Xinchao Zhang Shuting Zhang Hong Bai Yugo Zha Dan Luo Dan Chen Siyuan Chen Kang Ning Wei Liu 
supported by the National Natural Science Foundation of China(Grant Nos.32071465,31871334,and 31671374);the National Key R&D Program of China(Grant No.2018YFC0910502);Yuhao Zhang(Huazhong University of Science and Technology,China)to improve the analysis of this study。
Despite the skin microbiome has been linked to skin health and diseases,its role in modulating human skin appearance remains understudied.Using a total of 1244 face imaging phenomes and 246 cheek metagenomes,we first ...
关键词：Skin phenome Skin microbiome METAGENOME Machine learning Imaging. 
Unravelling biosynthesis and biodegradation potentials of microbial dark matters in hypersaline lakes
《Environmental Science and Ecotechnology》2024年第4期177-188,共12页Zhiguang Qiu Yuanyuan Zhu Qing Zhang Xuejiao Qiao Rong Mu Zheng Xu Yan Yan Fan Wang Tong Zhang Wei-Qin Zhuang Ke Yu 
supported by the National Key Research and Development Program of China(2021YFA1301300);Nature Science Foundation of China(62202014 and 61972217);Shenzhen Basic Research Programs(JCYJ20190808183205731,JCYJ20220812103301001,and JCYJ20220813151736001);Science and Technology Planning Project of Shenzhen Municipality(JCYJ20200109120416654)。
Biosynthesis and biodegradation of microorganisms critically underpin the development of biotechnology,new drugs and therapies,and environmental remediation.However,most uncultured microbial species along with their m...
关键词：BIOSYNTHESIS BIODEGRADATION Hypersaline lakes Metagenome-assembled genomes Microbial dark matters 
Targeted screening of an anti-inflammatory polypeptide from Rhopilema esculentum Kishinouye cnidoblasts and elucidation of its mechanism in alleviating ulcerative colitis based on an analysis of the gut microbiota and metabolites
《Food Science and Human Wellness》2024年第3期1336-1347,共12页Ziyan Wang Qiuyue Shi Ying Feng Jiaojiao Han Chenyang Lu Jun Zhou Zhonghua Wang Xiurong Su 
sponsored by the National Key R&D Program of China (2018YFD0901102);the Natural Science Foundation of Zhejiang Province (LQ22D060002);the Fund of State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products (ZS20190105);the Fundamental Research Funds for the Provincial Universities of Zhejiang (SJLY2021015);the K.C.Wong Magna Fund of Ningbo University。
Ulcerative colitis(UC)is a recurrent inflammatory bowel disease that imposes a severe burden on families and society.In recent years,exploiting the potential of marine bioactive peptides for the treatment of diseases ...
关键词：Ulcerative colitis Rhopilema esculentum Kishinouye Cnidoblasts Marine bioactive polypeptides METAGENOME Serum metabolome 
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