MULTILOCUS

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BLUPmrMLM:A Fast mrMLM Algorithm in Genome-wide Association Studies
《Genomics, Proteomics & Bioinformatics》2024年第3期55-67,共13页Hong-Fu Li Jing-Tian Wang Qiong Zhao Yuan-Ming Zhang 
supported by the National Natural Science Foundation of China(Grant Nos.32070557 and 32270673);the Huazhong Agricultural University Scientific&Technological Self-innovation Foundation,China(Grant No.2014RC020).
Multilocus genome-wide association study has become the state-of-the-art tool for dissecting the genetic architecture of complex and multiomic traits.However,most existing multilocus methods require relatively long co...
关键词：Genome-wide association study BLUP Multilocus model mrMLM Large-scale dataset 
Phylogeography and diversification of Oriental weaverbirds(Ploceus spp.):A gradual increase of eurytopy
《Avian Research》2023年第4期511-522,共12页Abdul Razaq Giovanni Forcina Urban Olsson Qian Tang Robert Tizard Naing Lin Nila Pwint Aleem Ahmed Khan 
supported by fellowships of the Ministry of Universities of the Spanish Government(María Zambrano/Next Generation EU);the Portuguese Foundation for Science and Technology(FCT,PTDC/BAA-AGR/28866/2017)to GF.
Weaverbirds are a speciose group of colorful passerines inhabiting the Old World Tropics.Nevertheless,the Oriental weaverbirds(Ploceus spp.),widespread across southern Asia,are much less diverse and restricted to a fe...
关键词：Avian phylogenetics Indian subcontinent Indochinese region Multilocus analyses Ploceidae 
Systematics of the avian family Alaudidae using multilocus and genomic data
《Avian Research》2023年第2期137-152,共16页Per Alstrom Zeinolabedin Mohammadi Erik D.Enbody Martin Irestedt Derek Engelbrecht Pierre-Andre Crochet Alban Guillaumet Loïs Rancilhac B.Irene Tieleman Urban Olsson Paul F.Donald Martin Stervander 
the National Swedish Research Council(grants No.2015-04402,2019-04486);the Carl Trygger Foundation(CTS 20:6);the Jornvall Foundation;Julian Francis for financial support;the National Genomics Infrastructure in Stockholm funded by Science for Life Laboratory,the Knut and Alice Wallenberg Foundation;the Research/Scientific Computing teams at The James Hutton Institute and NIAB for providing computational resources and technical support for the"UK's Crop Diversity Bioinformatics HPC"(BBSRC grant BB/S019669/1)。
The family Alaudidae,larks,comprises 93-100 species(depending on taxonomy)that are widely distributed across Africa and Eurasia,with single species extending their ranges to North and northernmost South America and Au...
关键词：Phylogeny PHYLOGENOMICS Multispecies coalescent Lark PARAPHYLY Taxonomy Subfamily description 
Multilocus DNA metabarcoding diet analyses of small cetaceans:a case study on highly vulnerable humpback dolphins and finless porpoises from the Pearl River Estuary,China
《Integrative Zoology》2023年第1期183-198,共16页Xiyang ZHANG Dingyu LUO Ri-Qing YU Yuping WU 
supported by the Natural Science Foundation of Guangdong Province(2017A030308005)in China;the National Natural Science Foundation of China(41576128,42007225);Guangdong Basic and Applied Basic Research Foundation(2020A1515010910)in China;China Postdoctoral Science Foundation(2019M653153);Fundamental Research Funds for the Central Universities(19lgpy95);Ocean Park Conservation Foundation of Hong Kong(MM01.1718);Innovation Group Project of Southern Marine Science and Engineering Guangdong Laboratory(Zhuhai)(311021004,311020003).
Accurate diet identification of top predators is crucial to fully understand their ecological roles.Compared to terrestrial animals,gathering dietary information from cetaceans is notoriously difficult.Here,we applied a...
关键词：diet species analyses DNA metabarcoding Indo-Pacificfinless porpoise Indo-Pacific humpback dolphin Pearl River Estuary 
A multilocus phylogeny of the moss genus Didymodon and allied genera (Pottiaceae):Generic delimitations and their implications for systematics被引量：1
《Journal of Systematics and Evolution》2022年第2期281-304,共24页Juan A.Jiménez María J.Cano Juan Guerra 
This work was financed by the Spanish Ministerio de Ciencia e Innovación(Project PID2019-103993GB-I00 cofinan ced by FEDER).
Didymodon s.l.is one of the largest genera in the moss family Pottiaceae,with about 122 species distributed in all continents.This,together with its high degree of morphological variation,has made it one of the taxono...
关键词：Andinella Didymodon Geheebia Gertrudiella Husnotiella molecular systematics taxonomy Trichostomopsis Tridontium Vinealobryum Zanderella 
Multilocus phylogeography and ecological niche modeling suggest speciation with gene flow between the two Bamboo Partridges被引量：1
《Avian Research》2021年第2期227-236,共10页Pengcheng Wang Chiafen Yeh Jiang Chang Hongyan Yao Yiqiang Fu Chengte Yao Xiao Wang Shouhsien Li Zhengwang Zhang 
This work was supported by the China Postdoctoral Science Foundation(2019M660044);National Natural Science Foundation of China(31872244);Biodiversity Survey,Monitoring and Assessment Project of Ministry of Ecology and Environment,China(2019HB2096001006 to Z.W.Z).
Background:Understanding how species diversify is a long-standing question in biology.The allopatric speciation model is a classic hypothesis to explain the speciation process.This model supposes that there is no gene...
关键词：Allopatric speciation Bamboo Partridge EVOLUTION Reproductive isolation Speciation with gene flow 
Pathway analysis for genome-wide genetic variation data:Analytic principles,latest developments,and new opportunities被引量：1
《Journal of Genetics and Genomics》2021年第3期173-183,共11页Micah Silberstein Nicholas Nesbit Jacquelyn Cai Phil H.Lee 
supported by National Institutes of Health R00 MH101367 and R01 MH119243(to P.H.Lee)。
Pathway analysis,also known as gene-set enrichment analysis,is a multilocus analytic strategy that integrates a priori,biological knowledge into the statistical analysis of high-throughput genetics data.Originally dev...
关键词：Pathway analysis Set-based association analysis Gene-set enrichment analysis Genome-wide association study Multilocus association analysis 
Co-occurrence of germline pathogenic variants for different hereditary cancer syndromes in patients with Lynch syndrome
《Cancer Communications》2021年第3期218-228,共11页Rosario Ferrer-Avargues Maria Isabel Castillejo Estela Damaso Virginia Diez-Obrero Noemi Garrigos Tatiana Molina Alan Codoner-Alejos Angel Segura Ana Beatriz Sanchez-Heras Adela Castillejo Jose Luis Soto 
supported by grants from the Foundation for the Promotion of Health and Biomedical Research in the Valencian Region,FISABIO(Grants:UGP-14-192 and UGP-16-146);the Carlos Ⅲ Health Institute(Grant AES:PI17/01082).
Background:Lynch syndrome(LS)is a hereditary condition characterized by a high risk of colorectal cancer,endometrial cancer,and other neoplasia associated with germline alterations in DNA mismatch repair genes.The cla...
关键词：cancer panel hereditary cancer lynch syndrome moderate penetrance genes multilocus inherited neoplasia alleles syndrome next-generation sequencing secondary findings 
Multilocus phylogeny suggests a distinct species status for the Nepal population of Assam macaques(Macaca assamensis):implications for evolution and conservation
《Zoological Research》2021年第1期3-13,共11页Laxman Khanal Mukesh Kumar Chalise Peng-Fei Fan Randall CKyes Xue-Long Jiang 
This study was supported by the Chinese Academy of Sciences-World Academy of Sciences(CAS-TWAS)President’s PhD Fellowship Program to L.K.,Second Tibetan Plateau Scientific Expedition and Research Program(2019QZKK0501);National Key Research and Development Plan(#2017YFC0505202)China.R.C.K.was supported in part by the Office of Research Infrastructure Programs(ORIP)of the National Institutes of Health through Grant Number P51OD010425 to the WaNPRC.L.K.was supported by the Rufford Small Grants(17666-1)of Rufford Foundation,UK partly for fieldworks;We thank the Department of National Parks and Wildlife Conservation and Department of Forest and Soil Conservation of the Government of Nepal for research permission,and our field assistants for their support in the field.
Phylogenetic relationships within the sinica-group of macaques based on morphological,behavioral,and molecular characteristics have remained controversial.The Nepal population of Assam macaques(Macaca assamensis)(NPAM...
关键词：HIMALAYA MACAQUES Paraphyletic sinica-group Taxonomy 
Multiallelic and multilocus simple sequence repeats(SSRs)to assess the genetic diversity of a Salix spp.germplasm collection被引量：1
《Journal of Forestry Research》2021年第1期263-271,共9页Giorgia Carletti Luigi Cattivelli Lorenzo Vietto Giuseppe Nervo 
the Project“RGV-FAO”(The Italian Ministry of Agricultural,Food and Forestry Policies-MiPAAF D.M.18862/06).
Salix L.(willow)is the largest genus of the family Salicaceae and plays an important role in riparian habitats,wetlands and in shrub tundra.Due to the diff erent implications for the species belonging to this family,i...
关键词：Microsatellites SALIX Genetic diversity 
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