PHYLOGENOMICS

作品数：134被引量：309H指数：10
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相关领域：生物学更多>>
相关作者：汪小全更多>>
相关机构：香港中文大学江西农业大学中国科学院植物研究所更多>>
相关期刊：《Molecular Plant》《Synthetic and Systems Biotechnology》《Science China(Life Sciences)》《Plant Diversity》更多>>
相关基金：国家自然科学基金国家重点基础研究发展计划中国博士后科学基金湖北省自然科学基金更多>>
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Backbone phylogeny of Salix based on genome skimming data
《Plant Diversity》2025年第2期178-188,共11页Kai-Yun Chen Jin-DanWang Rui-Qi Xiang Xue-Dan Yang Quan-Zheng Yun Yuan Huang Hang Sun Jia-Hui Chen 
supported by NSFC(32070226,32360065);the Key Projects of the Joint Fund of the National Natural Science Foundation of China(U23A20149);the Second Tibetan Plateau Scientific Expedition and Research(STEP)program(2024QZKK0200);Yunnan Fundamental Research Projects(202101AS070032);the CAS“Light ofWest China”Program(xbzg-zdsys-202110);the Yunnan Innovation Team Project(202305AS350004,with LD/NY/SB/CJG/CJH as the core member).
The genus Salix is a common component of the Northern Hemisphere dendroflora with important ecological and economic value.However,taxonomy and systematics of Salix is extremely difficult and relationships between main...
关键词：SALIX Genome skimming PHYLOGENOMICS Orthologous coding sequencing Subgeneric classification 
An integrative approach clarifies species delimitation and biogeographic history of Debregeasia(Urticaceae)
《Plant Diversity》2025年第2期229-243,共15页Amos Kipkoech Ke Li Richard I.Milne Oyetola Olusegun Oyebanji Moses C.Wambulwa Xiao-Gang Fu Dennis A.Wakhungu Zeng-Yuan Wu Jie Liu 
funded by the National Natural Science Foundation of China(42171071,42211540718);Key Research Program of Frontier Sciences,CAS(ZDBS-LY-7001);Yunnan Fundamental Research Projects(202401AT070190,202201BC070001);Top-notch Young Talents Project of Yunnan Provincial“Ten Thousand Talents Program”(YNWR-QNBJ-2018-146,YNWR-QNBJ-2020-293);CAS“Light of West China”Program;supported by the China Scholarship Council(202304910135 and 202304910138)for a one-year study at the University of Toronto.
Integrative data from plastid and nuclear loci are increasingly utilized to resolve species boundaries and phylogenetic relationships within major angiosperm clades.Debregeasia(Urticaceae),an economically important ge...
关键词：Debregeasia PLASTOME PHYLOGENOMICS Reticulate evolution Species delimitation Ultra-barcodes 
Modeling compositional heterogeneity resolves deep phylogeny of flowering plants
《Plant Diversity》2025年第1期13-20,共8页Yongli Wang Yan-Da Li Shuo Wang Erik Tihelka Michael S.Engel Chenyang Cai 
supported by the National Natural Science Foundation of China(42222201,42288201)。
Angiosperms experienced one of the most remarkable radiations of land plants and are now the dominant autotrophs in terrestrial ecosystems.Recent phylogenomic studies based on large-scale data from plastid,mitochondri...
关键词：ANGIOSPERMS Ceratophyllales PHYLOGENOMICS Radiation Methodological factors CAT model 
New insights into the phylogeny and infrageneric taxonomy of Saussurea based on hybrid capture phylogenomics(Hyb-Seq)
《Plant Diversity》2025年第1期21-33,共13页Liansheng Xu Zhuqiu Song Tian Li Zichao Jin Buyun Zhang Siyi Du Shuyuan Liao Xingjie Zhong Yousheng Chen 
supported by the National Natural Science Foundation of China(grant no.32200172);Guangzhou Science and technology project(grant no.2023A04J0715).
Saussurea is one of the largest and most rapidly evolving genera within the Asteraceae,comprising approximately 520 species from the Northern Hemisphere.A comprehensive infrageneric classification,supported by robust ...
关键词：Asteraceae Morphology Next-generation sequencing PHYLOGENOMICS SUBGENUS 
A revised classification of Dryopteridaceae based on plastome phylogenomics and morphological evidence,with the description of a new genus,Pseudarachniodes
《Plant Diversity》2025年第1期34-52,共19页Zheng-Yu Zuo Germinal Rouhan Shi-Yong Dong Hong-Mei Liu Xin-Yu Du Li-Bing Zhang Jin-Mei Lu 
funded by the National Natural Science Foundation of China(Grant No.31970232);the National Key Basic Research Program of China(Grant No.2014CB954100).
Dryopteridaceae are the largest fern family and include nearly 20%of extant fern diversity,with 24 currently recognized genera.Recognition and delineation of genera within this family have varied greatly.The three-sub...
关键词：Ctenitidoideae Infra-familial Morphological diagnostic characters PHYLOGENOMICS Rachis-costae architecture Stigmatopetris 
Genomic insights into ecological adaptation of oaks revealed byphylogenomic analysis of multiple species
《Plant Diversity》2025年第1期53-67,共15页Tian-Rui Wang Xin Ning Si-Si Zheng Yu Li Zi-Jia Lu Hong-Hu Meng Bin-Jie Ge Gregor Kozlowski Meng-Xiao Yan Yi-Gang Song 
supported by the National Natural Science Foundation of China(No.31901217);the Special Fund for Scientific Research of Shanghai Landscaping and City Appearance Administrative Bureau(grant numbers G192422,G242414,and G242416).
Understanding the ecological adaptation of tree species can not only reveal the evolutionary potential but also benefit biodiversity conservation under global climate change.Quercus is a keystone genus in Northern Hem...
关键词：QUERCUS Ecological adaptation PHYLOGENOMICS TRANSCRIPTOMES FAGACEAE 
Target enrichment data reveal rapid divergence with reticulate evolution of Maianthemum(Asparagaceae:Convallarioideae)in the Himalayan-Hengduan Mountains and eastern Asia
《Journal of Systematics and Evolution》2025年第1期85-98,共14页Yan-Yang Xie Ze-Long Nie Meng-Hua Zhang Ming-Yang Song Jun Wen Ying Meng 
supported by grants from Natural Sciences Foundation of China(32160052,31760055);Natural Sciences Foundation of Hunan Province(2019JJ40232 and 2019JJ40233).
Understanding plant diversity and the phylogenetic divergences in the Northern Hemisphere is essential for in-depth evolutionary studies and conservation efforts.Maianthemum is an ideal example to explore plant divers...
关键词：ASPARAGACEAE Himalayan-Hengduan Mountain Maianthemum PHYLOGENOMICS reticulate evolution 
Miocene climatic fluctuations likely explain the species diversification of Lysionotus(Gesneriaceae)in Pan-Himalaya
《Journal of Systematics and Evolution》2025年第1期134-147,共14页Jie Huang Fabien L.Condamine Meng-Qi Han Lei Cai Khang Sinh Nguyen Chun-Yu Zou Wei-Bin Xu 
supported by the National Natural Science Foundation of China(31860043);also in part by the scientific research capacity building project for the Nonggang Karst Ecosystem Observation and Research Station of Guangxi(GK23-026-273).
The Himalayas represent a complex mountain system housing some of the world's richest floras along with a high level of endemism.Among them,Lysionotus(Gesneriaceae)stands out as a small genus(~34 species)that is unexp...
关键词：BIOGEOGRAPHY Lysionotus morphology PHYLOGENOMICS transcriptome 
Phylogenetic and molecular dating analyses of Chinese endemic genus Dipelta(Caprifoliaceae)based on nuclear RAD-Seq and chloroplast genome data
《Journal of Systematics and Evolution》2025年第1期170-182,共13页Ya-Nan Cao Meng-Hao Wang Hang Ran Bin Tian Lu-Xian Liu Qing-Nan Wu Yan-Yan Liu Hong-Wei Wang Shan-Shan Zhu 
supported by the National Natural Science Foundation of China(Grant Nos.31800179,32001086,and 31670389).
Dipelta Maxim.(Caprifoliaceae)is a Tertiary relic genus endemic to China,which includes three extant species,Dipelta floribunda,Dipelta yunnanensis,and Dipelta elegans.Recent progress in the systematics and phylogeogr...
关键词：coalescent modeling ENDEMISM introgressive hybridization molecular dating phylogenetic discordance PHYLOGENOMICS 
Biogeographic history of Pterocarya(Juglandaceae)inferred from phylogenomic and fossil data
《Journal of Systematics and Evolution》2024年第6期1165-1176,共12页Hua Yan Peng Zhou Wei Wang Jian-Fei Ye Shao-Lin Tan Chun-Ce Guo Wen-Gen Zhang Zi-Wei Zhu Yi-Zhen Liu Xiao-Guo Xiang 
supported by the National Natural Science Foundation of China(31670212,32060056,and 31300181);the Thousand Talents Program of Jiangxi Province(jxsq2018106032);Jiangxi Provincial Natural Science Foundation,China(ZBG20230418029 and 20232ACB205010).
Pterocarya (Juglandaceae) is disjunctly distributed in East Asia and the Caucasus region today, but its fossils are widely distributed in the Northern Hemisphere. We first inferred phylogeny with time estimation of Pt...
关键词：BIOGEOGRAPHY East Asian-Europe disjunction FOSSIL molecular clock PHYLOGENOMICS species distribution modeling 
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