GENOME-WIDE

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Genome-Wide Discovery of Candidate Genes Associated with Cold Tolerance in Rice at Various Growth Stages
《Rice science》2025年第2期137-142,共6页LIU Jiajun WANG Cuili SUN Mingmao MA Xiaoding HAN Bing GUO Xiaohong HAN Longzhi CUI Di 
supported by the Key Research and Development Program of Ningxia Hui Autonomous Region,China(Grant No.2023BCF01010);the National Natural Science Foundation of China(Grant No.32201765);the Key Research and Development Program of Shandong Province,China(Grant No.2019-GNC106107);the Science and Technology Innovation Program of Chinese Academy of Agricultural Sciences;the National Crop Germplasm Resources Center,China(Grant No.NCGRC-2023-02).
A genome-wide association study(GWAS)was conducted on a collection of 166 Chinese rice mini-core germplasms to investigate cold tolerance traits across various rice growth stages.Population structure analysis revealed...
关键词：POPULATION Growth ORIGIN 
Genome-wide identification of the pectate lyase(PEL)gene family members in Malvaceae,and their contribution to cotton fiber quality被引量：1
《Journal of Integrative Agriculture》2024年第10期3264-3282,共19页Qian Deng Zeyu Dong Zequan Chen Zhuolin Shi Ting Zhao Xueying Guan Yan Hu Lei Fang 
supported by the Ministry of Agriculture and Rural Affairs,China(2023ZD04039-01);the National Natural Science Foundation of China(32172008);the Leading Innovative and Entrepreneur Team Introduction Program of Zhejiang,China(2019R01002)。
Pectin is a major constituent of the plant cell wall.Pectate lyase(PEL,EC 4.2.2.2)uses anti-β-elimination chemistry to cleave theα-1,4 glycosidic linkage in the homogalacturonan region of pectin.However,limited info...
关键词：MALVACEAE pectate lyase(PEL) Gossypium species fiber quality 
Grain Protein Content Phenotyping in Rice via Hyperspectral Imaging Technology and a Genome-Wide Association Study
《Plant Phenomics》2024年第3期684-695,共12页Hengbiao Zheng Weijie Tang Tao Yang Meng Zhou Caili Guo Tao Cheng Weixing Cao Yan Zhu Yunhui Zhang Xia Yao 
supported by the National Key Research and Development Program of China(2021YFD2000100);the National Natural Science Foundation of China(32101617);the Fundamental Research Funds for the Central Universities(JSJL2023005);the Zhongshan Biological Breeding Laboratory(ZSBBL-KY2023-05);the Key Independent Research Project of Jjiangsu Key Laboratory of Information Agriculture(KLIAZZ2301);the Jiangsu Collaborative Innovation Center for Modern Crop Production(JCICMCP).
Efficient and accurate acquisition of the rice grain protein content(GPC)is important for selecting high-quality rice varieties,and remote sensing technology is an attractive potential method for this task.However,the...
关键词：ASSOCIATION technology content imaging protein GRAIN study RICE GENOME-WIDE HYPERSPECTRAL 
Leveraging the potential of big genomic and phenotypic data for genome-wide association mapping in wheat
《The Crop Journal》2024年第3期803-813,共11页Moritz Lell Yusheng Zhao Jochen C.Reif 
funding within the Wheat BigData Project(German Federal Ministry of Food and Agriculture,FKZ2818408B18)。
Genome-wide association mapping studies(GWAS)based on Big Data are a potential approach to improve marker-assisted selection in plant breeding.The number of available phenotypic and genomic data sets in which medium-s...
关键词：Big Data Genome-wide association study Data integration Genomic prediction WHEAT 
Identification of new cotton fiber-quality QTL by multiple genomic analyses and development of markers for genomic breeding
《The Crop Journal》2024年第3期866-879,共14页Haozhe Tan Binghui Tang Mengling Sun Qiulu Yin Yizan Ma Jianying Li Pengcheng Wang Zhonghua Li Guannan Zhao Maojun Wang Xianlong Zhang Chunyuan You Lili Tu 
supported by National Key Research and Development Program of China(2022YFF1001400);the National Natural Science Foundation of China(31830062 and 32172071);Innovation and Application of Superior Crop Germplasm Resources of Shihezi(2021NY01);Breeding of New Cotton Varieties and Application of Transgenic Breeding Technology(2022NY01)。
Cotton fiber is one of the main raw materials for the textile industry.In recent years,many cotton fiber quality QTL have been identified,but few were applied in breeding.In this study,a genome wide association study(...
关键词：Cotton fiber quality breeding GWAS Genome-wide selective sweep analysis Genomic selection InDel markers 
Genome-wide identification,characterization and functional prediction of the SRS gene family in sesame(Sesamum indicum L.)被引量：1
《Oil Crop Science》2024年第2期69-80,共12页Farjana Afroz Susmi Tasmina Islam Simi Md Nahid Hasan Md Abdur Rahim 
Sesame(Sesamum indicum L.)is an ancient oilseed crop of the Pedaliaceae family with high oil content and potential health benefits.SHI RELATED SEQUENCE(SRS)proteins are the transcription factors(TFs)specific to plants...
关键词：SiSRS gene family SHI Transcription factor CHARACTERIZATION Sesamum indicum 
Genome-wide and candidate gene association studies identify BnPAP17 as conferring the utilization of organic phosphorus in oilseed rape
《Journal of Integrative Agriculture》2024年第4期1134-1149,共16页Ping Xu Hao Li Haiyuan Li Ge Zhao Shengjie Dai Xiaoyu Cui Zhenning Liu Lei Shi Xiaohua Wang 
financially supported by the National Natural Science Foundation of China(32201868 and 32001575)。
Phosphorus(P)is essential for living plants,and P deficiency is one of the key factors limiting the yield in rapeseed production worldwide.As the most important organ for plants,root morphology traits(RMTs)play a key ...
关键词：genome-wide association studies(GWAS) root morphology traits(RMTs) organic phosphorus(Po) oilseed rape BnPAP17 
Genome-wide identification and expression profiling of photosystem II(PsbX)gene family in upland cotton(Gossypium hirsutum L.)
《Journal of Cotton Research》2024年第1期1-14,共14页RAZA Irum PARVEEN Abida AHMAD Adeel HU Daowu PAN Zhaoe ALI Imran DU Xiongming 
supported by National Natural Science Foundation of China(32060466);Chinese Academy of Agricultural Sciences。
Background Photosystem II(PSII)constitutes an intricate assembly of protein pigments,featuring extrinsic and intrinsic polypeptides within the photosynthetic membrane.The low-molecular-weight transmembrane protein Psb...
关键词：PHOTOSYSTEM PHYLOGENETIC SYNTENY RNA seq Gene expression Orthologous 
Genome-Wide Dissection of Quan 9311A Breeding Process and Application Advantages
《Rice science》2023年第6期552-566,共15页LI Qianlong FENG Qi WANG Heqin KANG Yunhai ZHANG Conghe DU Ming ZHANG Yunhu WANG Hui CHEN Jinjie HAN Bin FANG Yu WANG Ahong 
This study was funded by the National Natural Science Foundation of China(Grant No.32001516);Shanghai Agriculture Applied Technology Development Program,China(Grant No.X20190103);Rice Industry of China Agriculture Research System(Grant No.CARS-01-03).
Germplasm resource innovation is a crucial factor for cultivar development,particularly within the context of hybrid rice breeding based on the three-line system.Quan 9311A,a cytoplasmic male sterile(CMS)line,has been...
关键词：BREEDING hybrid rice PHENOTYPE quantitative trait nucleotide locus rice genome navigation system whole-genome sequencing 
Genome-wide and transcriptome-wide identification of the APX gene family in rapeseed (Brassica napus L.) and their expression features under low temperature stress
《Oil Crop Science》2023年第4期259-265,共7页Xuan Sun Guomei Liu Lin Yao Chunfang Du 
supported by the Fundamental Research Project of Shanxi Province(202203021211276);Major Program of Shanxi Province(202201140601025-5);The Science and Technology Innovated Project of Shanxi Agricultural University(CXGC2023050).
Ascorbate peroxidase(APX)is a crucial H2O2 scavenger that utilizes ascorbic acid as an electron donor and plays a significant role in plant stress resistance.This study aims to identify and characterize the Brassica n...
关键词：Brassica napus Low-temperature stress APX Bioinformatics 
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