SKIMMING

作品数：43被引量：66H指数：6
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相关机构：西北师范大学淮安市楚州中学江苏省扬州中学徐州高等师范学校更多>>
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Backbone phylogeny of Salix based on genome skimming data
《Plant Diversity》2025年第2期178-188,共11页Kai-Yun Chen Jin-DanWang Rui-Qi Xiang Xue-Dan Yang Quan-Zheng Yun Yuan Huang Hang Sun Jia-Hui Chen 
supported by NSFC(32070226,32360065);the Key Projects of the Joint Fund of the National Natural Science Foundation of China(U23A20149);the Second Tibetan Plateau Scientific Expedition and Research(STEP)program(2024QZKK0200);Yunnan Fundamental Research Projects(202101AS070032);the CAS“Light ofWest China”Program(xbzg-zdsys-202110);the Yunnan Innovation Team Project(202305AS350004,with LD/NY/SB/CJG/CJH as the core member).
The genus Salix is a common component of the Northern Hemisphere dendroflora with important ecological and economic value.However,taxonomy and systematics of Salix is extremely difficult and relationships between main...
关键词：SALIX Genome skimming PHYLOGENOMICS Orthologous coding sequencing Subgeneric classification 
Skmer approach improves species discrimination in taxonomically problematic genus Schima(Theaceae)
《Plant Diversity》2024年第6期713-722,共10页Han-Ning Duan Yin-Zi Jiang Jun-Bo Yang Jie Cai Jian-Li Zhao Lu Li Xiang-Qin Yu 
supported by National Natural Science Foundation of China(No.32070369);the Youth Innovation Promotion Association CAS of China(No.2021393);the Yunnan Revitalization Talent Support Program“Young Talent”Project,the Applied Fundamental Research Foundation of Yunnan Province(202301AT070308);the Fund of Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology(YNPRAEC-2023006).
Genome skimming has dramatically extended DNA barcoding from short DNA fragments to next generation barcodes in plants.However,conserved DNA barcoding markers,including complete plastid genome and nuclear ribosomal DN...
关键词：SCHIMA Genome skimming Species discrimination Skmer 
Deep genome skimming reveals the hybrid origin of Pseudosasa gracilis (Poaceae: Bambusoideae)
《Plant Diversity》2024年第3期344-352,共9页Xiang-Zhou Hu Cen Guo Sheng-Yuan Qin De-Zhu Li Zhen-Hua Guo 
supported by the Strategic Priority Research Program of the Chinese Academy of Sciences(XDB31000000);the National Natural Science Foundation of China(32200193).
Pseudosasa gracilis(Poaceae:Bambusoideae)is a temperate woody bamboo species endemic to Southcentral China with a narrow distribution.Previous phylogenetic studies revealed an unexpected,isolated phylogenetic position...
关键词：PHYLOGENOMICS Hybridization INTROGRESSION Pseudosasa gracilis Pseudosasa Sinosasa 
An updated classification for the hyper-diverse genus Corydalis(Papaveraceae: Fumarioideae)based on phylogenomic and morphological evidence被引量：4
《Journal of Integrative Plant Biology》2023年第9期2138-2156,共19页Jun‐Tong Chen Magnus Lidén Xian‐Han Huang Liang Zhang Xin‐Jian Zhang Tian‐Hui Kuang Jacob BLandis Dong Wang Tao Deng Hang Sun 
supported by grants from the Second Tibetan Plateau Scientific Expedition and Research (STEP) program (2019QZKK0502);the Key R&D Program of Yunnan Province (202103AF140005);the National Natural Science Foundation of China (32170215 and 32100187);the National Natural Science Foundation of China-Yunnan Joint Fund to Support Key Projects (U1802232);Strategic Priority Research Program of Chinese Academy of Sciences(XDA20050203);International Partnership Program of Chinese Academy of Sciences (151853KYSB20180009);Yunnan Young&Elite Talents Project (YNWR-QNBJ-2019-033);Ten Thousand Talents Program of Yunnan Province (202005AB160005);Chinese Academy of Sciences “Light of West China” Program。
The genus Corydalis, with ca. 530 species, has long been considered taxonomically challenging because of its great variability. Previous molecular analyses,based on a few molecular markers and incomplete taxonomic sam...
关键词：character evolution CORYDALIS genome skimming PAPAVERACEAE PHYLOGENY 
流体-固体相互作用、碰撞和起飞的建模
《Acta Mechanica Sinica》2023年第5期1-12,共12页Frank T.Smith Ellen M.Jolley Ryan A.Palmer 
Support from the Engineering and Physical Sciences Research Council(Grants Nos.EP/R511638/1,GR/T11364/01,EP/G501831/1,EP/H501665/1,and EP/K032208/1);University College London(two IAA awards);Aerotex UK is also acknowledged with gratitude.Thanks are due to the Beijing International Center for Theoretical;Applied Mechanics for their interest and invitation concerning this article.
本文是流体-固体相互作用机制方面的最新进展综述,主要研究固体物体自身的运动与其周围流体运动之间的相互影响.非稳态相互作用的数学模型是对两个空间维度和时间尺度的内部通道和外部近壁流的描述.本文重点描述伴随计算量减少的分析发...
关键词：Fluid-body interactions SKIMMING IMPACTS Analysis 
Testing complete plastomes and nuclear ribosomal DNA sequences for species identification in a taxonomically difficult bamboo genus Fargesia被引量：3
《Plant Diversity》2023年第2期147-155,共9页Shi-Yu Lv Xia-Ying Ye Zhong-Hu Li Peng-Fei Ma De-Zhu Li 
supported by grants from CAS' Largescale Scientific Facilities (Grant No.2017-LSF-GBOWS-02);the Key R & D Program of Yunnan Province,China (Grant No.20210 3AC100003);Ten Thousand Talent Program of Yunnan Province (Grant No.YNWR-QNBJ-2020-297)。
Fargesia,the largest genus within the temperate bamboo tribe Arundinarieae,has more than 90 species mainly distributed in the mountains of Southwest China.The Fargesia bamboos are important components of the subalpine...
关键词：Fargesia Genome-skimming DNA barcoding PLASTOME Ribosomal DNA 
Phylogenomic study of Amorphophallus(Alismatales;Araceae):When plastid DNA gene sequences help to resolve the backbone subgeneric delineation
《Journal of Systematics and Evolution》2023年第1期64-79,共16页Charles Pouchon Jérémy Gauthier Camille Pitteloud Cyrille Claudel Nadir Alvarez 
Encompassing ca.200 species distributed in paleotropical Africa and Asia,Amorphophallus is one of the largest genera of Araceae.In spite of the great economic interest in its glucomannan production,only a few studies ...
关键词：Alismatales genome skimming molecular dating Oligocene/Miocene dispersion organelle genomes 
Systematics of Mukdenia and Oresitrophe(Saxifragaceae):Insights from genome skimming data被引量：1
《Journal of Systematics and Evolution》2023年第1期99-114,共16页Lu-Xian Liu Pan Deng Meng-Zhen Chen Li-Min Yu Joongku Lee Wei-Mei Jiang Cheng-Xin Fu Fu-De Shang Pan Li 
supported by the Zhejiang Provincial Natural Science Foundation,China(Grant No.LY19C030022);the Key scientifc research projects of colleges and universities in Henan Province(Grant No.19A180001);the National Natural Science Foundation of China(Grant Nos.31970225,31900188).
Oresitrophe and Mukdenia(Saxifragaceae)are epilithic sister genera used in traditional Chinese medicine.The taxonomy of Mukdenia,especially of M.acanthifolia,has been controversial.To address this,we produced plastid ...
关键词：DNA barcode PHYLOGENOMICS PHYLOGENY PLASTOME species identification taxonomy 
Development of genomic resources for Wenchengia alternifolia(Lamiaceae)based on genome skimming data被引量：1
《Plant Diversity》2022年第6期542-551,共10页Qi-Yue Zhou Hui-Xia Cai Zi-Han Liu Lang-Xing Yuan Lei Yang Tuo Yang Bo Li Pan Li 
the National Natural Science Foundation of China(grant number 31970225 and 31900181);the Zhejiang Provincial Natural Science Foundation(grant number LY19C030007);the Open Fund of Shanghai Key Laboratory of Plant Functional Genomics and Resources(PFGR202104).
Wenchengia alternifolia(Lamiaceae),the sole species of the genus Wenchengia is extremely rare and is currently listed as Critically Endangered(CR) on the IUCN Red List. The species had long been considered endemic to ...
关键词：Wenchengia Plastid hotspot Simple sequence repeat(SSR) Single nucleotide polymorphism(SNP) 
Phylogenomic conflict analyses in the apple genus Malus s.l.reveal widespread hybridization and allopolyploidy driving diversification,with insights into the complex biogeographic history in the Northern Hemisphere被引量：3
《Journal of Integrative Plant Biology》2022年第5期1020-1043,共24页Bin-Bin Liu Chen Ren Myounghai Kwak Richard GJHodel Chao Xu Jian He Wen-Bin Zhou Chien-Hsun Huang Hong Ma Guan-Ze Qian De-Yuan Hong Jun Wen 
National Natural Science Foundation of China supports this research (32000163 and 31620103902)
Phylogenomic evidence from an increasing number of studies has demonstrated that different data sets and analytical approaches often reconstruct strongly supported but conflicting relationships.In this study,785 singl...
关键词：deep genome skimming genomic discordance historical biogeography massive extinction reticulate evolution single-copy nuclear genes 
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