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Culturable endophytic Sordariomycetes from Rosa roxburghii:New species and lifestyles: 《Journal of Systematics and Evolution》2024年第4期637-676,共40页Hong Zhang Yu-Tao Mao Ming-Xia Ma Guang-Can Tao Tian-Peng Wei Yu-Lan Jiang; the National Natural Science Foundation of China(No.32060009);the Guizhou Provincial Science and Technology Projects(Nos.[2020]1Y043 and[2022]243).; Rosa-associated fungi are rich in species and diverse in function,with many potential new taxa.However,only a few publications have reported Rosa-associated endophytic fungi using a combination of molecular systematic...; 关键词：morphology multigene phylogenies novel taxa Rosa-associated fungi taxonomy

Genome-scale angiosperm phylogenies based on nuclear,plastome,and mitochondrial datasets被引量：3: 《Journal of Integrative Plant Biology》2023年第6期1479-1489,共11页Hongyin Hu Pengchuan Sun Yongzhi Yang Jianxiang Ma Jianquan Liu; supported by the Strategic Priority Research Program of the Chinese Academy of Sciences(XDB31000000 to J.L.and Y.Y.);the PhD Programs Foundation of the Department of Education of Gansu(2021QB007 to Y.Y.);the Science Fund for Creative Research Groups of Gansu Province(21JR7RA533 to Y.Y.);the Young Talent Development Project of the State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems(2021+02 to Y.Y.);the International Collaboration 111 Programme(BP0719040)。; Angiosperms dominate the Earth’s ecosystems and provide most of the basic necessities for human life.The major angiosperm clades comprise 64 orders,as recognized by the APGⅣclassification.However,the phylogenetic re...; 关键词：ANGIOSPERMS divergence times GENOMIC PHYLOGENOMICS

Corrigendum to“V.Phylo Maker2:An updated and enlarged R package that can generate very large phylogenies for vascular plants”[PlantDivers.44(2022)335-339]: 《Plant Diversity》2023年第1期122-122,共1页; The authors regret the omission of supplementary fi les in the original artide.Download all supplementary fles included with this artide.The author would like to apologise for any inconvenience caused.; 关键词：Plant GENERA COR

Origin and evolution of the Micronesian biota: Insights.from moiecular phylogenies and biogeography reveal longdistance dispersal scenarios and founder-event speciation被引量：1: 《Journal of Systematics and Evolution》2022年第5期973-997,共25页Else Demeulenaere Stefanie M.Ickert-Bond; Micronesian islands taxa show high endemism rates,but very little is known about their biogeographical histories.The lack of systematic biogeography is mainly due to insuficient phylogenetic research in Micronesia.Wit...; 关键词：endemic founder-event speciation island biogeography LDD scenarios MICRONESIA

V.PhyloMaker2:An updated and enlarged R package that can generate very large phylogenies for vascular plants被引量：26: 《Plant Diversity》2022年第4期335-339,共5页Yi Jin Hong Qian; supported by the Natural Science and Technology Foundation of Guizhou Province[[2020]1Z013](to Y.J.);the Joint Fund of the National Natural Science Foundation of China and the Karst Science Research Center of Guizhou Province[U1812401](to Y.J.).; An earlier version of V.PhyloMaker has been broadly used to generate phylogenetic trees of vascular plants for botanical,biogeographical and ecological studies.Here,we update and enlarge this package,which is now cal...; 关键词：Community phylogenetics Global plants PHYLOGENY Species list Vascular plants V.PhyloMaker

Generic Simulated Annealing: 《Open Journal of Applied Sciences》2022年第6期1011-1025,共15页Chadi Kallab Samir Haddad Jinane Sayah Mohamad Chakroun; One of the many problems that are considered to be NP-Hard is the Multiple Sequence Alignment one that initially requires, as for any other of its siblings, a specific encoding schema and design of the main functional...; 关键词：GENERIC HEURISTICS PHYLOGENIES Bio-Informatics NP-HARD Simulated Annealing

Flexible Traceable Generic Genetic Algorithm: 《Open Journal of Applied Sciences》2022年第6期877-891,共15页Chadi Kallab Samir Haddad Jinane Sayah; This document elaborates on the generic implementation one of the main heuristics algorithms verified through its quick application to a biology problem requiring to find out an optimal sequences tree topology. In ord...; 关键词：GENERIC HEURISTICS PHYLOGENIES Bio-Informatics NP-HARD Genetic Algorithm

Multispecies coalescent and its applications to infer species phylogenies and cross-species gene flow: 《National Science Review》2021年第12期81-98,共18页Xiyun Jiao Tomas Flouri Ziheng Yang; supported by Biotechnology and Biological Sciences Research Council grants (BB/P006493/1 and BB/T003502/1) to Z.Y。; Multispecies coalescent(MSC) is the extension of the single-population coalescent model to multiple species. It integrates the phylogenetic process of species divergences and the population genetic process of coalesce...; 关键词：anomaly zone BPP deep coalescence gene flow Markov chain Monte Carlo multispecies coalescent species tree

Are phylogenies resolved at the genus level appropriate for studies on phylogenetic structure of species assemblages?被引量：3: 《Plant Diversity》2021年第4期255-263,共9页Hong Qian Yi Jin; Phylogenies are essential to studies investigating the effect of evolutionary history on assembly of species in ecological communities and geographical and ecological patterns of phylogenetic structure of species asse...; 关键词：Genus-level phylogeny Species-level phylogeny Phylogenetic diversity Phylogenetic relatedness Community phylogenetics Environmental gradient

What are“tippy”and“stemmy”phylogenies?Resolving a phylogenetic terminological tangle: 《Journal of Systematics and Evolution》2021年第2期403-404,共2页Rafael Molina-Venegas; l thank Dr.Isabel Sanmartin,Dr.Miguel A.Rodriguez,Dr.Aurelio Malo,and Dr.lgnacio Morales-Castilla for their useful comments on the draft.RMV was supported by the TALENTO program of the Regional Govermment of the Community of Madrid(2018-T2/AMB-10332).l declare no conflict of interest.; Phylogenetic stemminess is one of the most popular metrics of tree shape among evolutionary biologists.The index was originally described by Fiala&Sokal(1985)as the proportion of the total length of the branches of a ...; 关键词：tippy stemmy PHYLOGENIES

PHYLOGENIES