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Epistasis-aware genome-wide association studies provide insights into the efficient breeding of high-yield and high-quality rice
《Journal of Integrative Agriculture》2024年第8期2541-2556,共16页Xiaogang He Zirong Li Sicheng Guo Xingfei Zheng Chunhai Liu Zijie Liu Yongxin Li Zheming Yuan Lanzhi Li 
partially supported by the Science and Technology Innovation Program of Hunan Province,China(2023NK2001);the Hubei Key Laboratory of Food Crop Germplasm and Genetic Improvement,China(2022LZJJ08);the Special Funds for Construction of Innovative Provinces in Hunan Province,China(2021NK1011);the Natural Science Foundation of Hunan Province,China(2020JJ4039);the Key Research and Development Program of Hubei Province,China(2021BBA223)。
Marker-assisted selection(MAS)and genomic selection(GS)breeding have greatly improved the efficiency of rice breeding.Due to the influences of epistasis and gene pleiotropy,ensuring the actual breeding effect of MAS a...
关键词：rice genome-wide association study EPISTASIS gene pleiotropy maker-associated selection genome selection 
Selection and application of four QTLs for grain protein content in modern wheat cultivars
《Journal of Integrative Agriculture》2024年第8期2557-2570,共14页Zihui Liu Xiangjun Lai Yijin Chen Peng Zhao Xiaoming Wang Wanquan Ji Shengbao Xu 
supported by the“Integration of Two Chains”Key Research and Development Projects of Shaanxi Province“Wheat Seed Industry Innovation Project”,China;the Key R&D of Yangling Seed Industry Innovation Center,China(Ylzy-xm-01)。
The grain protein content(GPC)is the key parameter for wheat grain nutritional quality.This study conducted a resampling GWAS analysis using 406 wheat accessions across eight environments,and identified four previousl...
关键词：BREEDING grain protein content haplotype selection and application WHEAT 
Integrating artificial intelligence and high-throughput phenotyping for crop improvement被引量：1
《Journal of Integrative Agriculture》2024年第6期1787-1802,共16页Mansoor Sheikh Farooq Iqra Hamadani Ambreen Kumar A Pravin Manzoor Ikra Yong Suk Chung 
supported by a grant from the Standardization and Integration of Resources Information for Seed-cluster in Hub-Spoke Material Bank Program,Rural Development Administration,Republic of Korea(PJ01587004).
Crop improvement is crucial for addressing the global challenges of food security and sustainable agriculture.Recent advancements in high-throughput phenotyping(HTP)technologies and artificial intelligence(AI)have rev...
关键词：artificial intelligence crop improvement data analysis high-throughput phenotyping machine learning precision agriculture trait selection 
Integration of genome-wide association study and selection signatures reveals genetic determinants for skeletal muscle production traits in an F2 chicken population
《Journal of Integrative Agriculture》2022年第7期2065-2075,共11页LI Yu-dong BAI Xue LIU Xin WANG Wei-jia LI Zi-wei WANG Ning XIAO Fan GAO Hai-he GUO Huai-shun LI Hui WANG Shou-zhi 
supported by the National Natural Science Foundation of China(31572394);the China Agriculture Research System of MOF and MARA(CARS-41);the White Feather Broiler Breeding Joint Project of the Ministry of Agriculture and Rural Affairs of China(19190526)。
Improving the production of broiler chicken meat has been a goal of broiler breeding programs worldwide for many years. However, the genetic architectures of skeletal muscle production traits in chickens have not yet ...
关键词：CHICKEN muscle growth and development GWAS selection signature 
Genome-wide identification,evolutionary selection,and genetic variation of DNA methylation-related genes in Brassica rapa and Brassica oleracea被引量：1
《Journal of Integrative Agriculture》2022年第6期1620-1632,共13页AN Feng ZHANG Kang ZHANG Ling-kui LI Xing CHEN Shu-min WANG Hua-sen CHENG Feng 
supported by the National Natural Science Foundation of China (NSFC;31872105 and 31801862);the Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences, and the Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture and Rural Affairs, China
DNA methylation plays an important role in plant growth and development,and in regulating the activity of transposable elements(TEs).Research on DNA methylation-related(DMR)genes has been reported in Arabidopsis,but l...
关键词：DNA methylation Brassica rapa Brassica oleracea evolutionary selection genetic variation gene expression 
Genome-wide scan for selection signatures based on whole-genome re-sequencing in Landrace and Yorkshire pigs被引量：2
《Journal of Integrative Agriculture》2021年第7期1898-1906,共9页WANG Kai WU Ping-xian CHEN De-juan ZHOU Jie YANG Xi-di JIANG An-an MA Ji-deng TANG Qian-zi XIAO Wei-hang JIANG Yan-zhi ZHU Li QIU Xiao-tian LI Ming-zhou LI Xue-wei TANG Guo-qing 
supported by the grants from the Sichuan Science and Technology Program,China(2020YFN0024);the earmarked fund for the China Agriculture Research System(CARS-35-01A);the National Key R&D Program of China(2018YFD0501204);the National Natural Science Foundation of China(C170102);the Sichuan Innovation Team of Pig,China(sccxtd-2021-08)。
We performed a genome-wide scan to detect selection signatures that showed evidence of positive selection in the domestication process by re-sequencing the whole genomes of Landrace and Yorkshire pigs.Fifteen annotate...
关键词：pig variation whole-genome sequence selection signature phenotypic trait 
Exploring the genetic features and signatures of selection in South China indigenous pigs被引量：4
《Journal of Integrative Agriculture》2021年第5期1359-1371,共13页DIAO Shu-qi XU Zhi-ting YE Shao-pan HUANG Shu-wen TENG Jin-yan YUAN Xiao-long CHEN Zan-mou ZHANG Hao LI Jia-qi ZHANG Zhe 
the National Key R&D Program of China(2018YFD0501200);the earmarked fund for China Agriculture Research System(CARS-35);the Key R&D Program of Guangdong Province,China(2018B020203003)。
To explore the genetic features and signatures of selection in indigenous pigs from South China and Duroc pigs,259 pigs from six populations were genotyped using single-nucleotide polymorphism(SNP)BeadChips.Principal ...
关键词：PIGS population structure effective population size SNP 
Cultivar selection can increase yield potential and resource use efficiency of spring maize to adapt to climate change in Northeast China被引量：4
《Journal of Integrative Agriculture》2021年第2期371-382,共12页SU Zheng-e LIU Zhi-juan BAI Fan ZHANG Zhen-tao SUN Shuang HUANG Qiu-wan LIU Tao LIU Xiao-qing YANG Xiao-guang 
supported by the National Key Research and Development Program of China(2016YFD0300101-03)。
Northeast China (NEC) is one of the major maize production areas in China.Agro-climatic resources have obviously changed,which will seriously affect crop growth and development in this region.It is important to invest...
关键词：APSIM maize potential yield radiation use efficiency resource utilization percentage cultivar selection 
Development of peanut varieties with high oil content by in vitro mutagenesis and screening被引量：3
《Journal of Integrative Agriculture》2020年第12期2974-2982,共9页WANG Jing-shan SHI Lei LIU Yue ZHAO Ming-xia WANG Xia QIAO Li-xian SUI Jiong-ming LI Guan ZHU Hong YU Shan-lin 
This research was funded by the National Natural Science Foundation of China(31571705 and 31872875);the Key R&D Program of Shandong Province,China(2018GNC111014);the Open Oroject of the Key Lab of Oil Crop Biology and Genetic Breeding,Ministry of Agriculture and Rural Affairs of China(KF2018008).
Peanut (Arachis hypogaea L.) is an important oil crop globally and high oil content is one of the major targets in peanut breeding programs. Previous studies indicated that the osmotic pressure (OP) of the leaves of p...
关键词：Arachis hypogaea in vitro mutagenesis HYP-directed selection high oil variety 
An optimized industry processing technology of peanut tofu and the novel prediction model for suitable peanut varieties被引量：9
《Journal of Integrative Agriculture》2020年第9期2340-2351,共12页CHEN Bing-yu LI Qi-zhai HU Hui MENG Shi Faisal SHAH WANG Qiang LIU Hong-zhi 
This study was supported by the earmarked fund for China Agriculture Research System(CARS-13-03A);the Corps Science and Technology Development Special Promotion Achievement Transformation Guidance Plan,Xinjiang,China(2018BCO12);the TaiShan Industrial Experts Programme,China(LJNY201711).
Peanut protein is easily digested and absorbed by the human body,and peanut tofu does not contain flatulence factors and beany flour.However,at present,there is no industrial preparation process of peanut tofu,whereas...
关键词：peanut tofu PROCESS QUALITY peanut variety selection evaluation standard prediction model 
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