COLLINEARITY

作品数：21被引量：95H指数：5
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相关领域：农业科学更多>>
相关机构：华中科技大学更多>>
相关期刊：《Molecular Plant》《Science China(Life Sciences)》《Quantitative Biology》《Computers, Materials & Continua》更多>>
相关基金：国家自然科学基金国家重点基础研究发展计划更多>>
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Chloroplast Genome Sequence Characterization and Phylogenetic Analysis of Pyrola Atropurpurea Franch
《Phyton-International Journal of Experimental Botany》2025年第2期331-345,共15页Wentao Sheng 
supported by the Education Reform Program of Jiangxi Provincial Department of Education(JXJG-22-23-3,JXJG-23-23-5);the“Biology and Medicine”Discipline Construction Project of Nanchang NormalUniversity(100/20149);Jiangxi Province Key Laboratory of Oil Crops Biology(YLKFKT202203);the Education Reform Program of Nanchang Normal University(NSJG-21-25);Nanchang Key Laboratory of Comprehensive Research and Development of Brasenia schreberi(32060078).
Pyrola atropurpurea Franch is an important annual herbaceous plant.Few genomic analyses have been conducted on this plant,and chloroplast genome research will enrich its genomics basis.This study is based on high-thro...
关键词：Pyrola atropurpurea chloroplast genome scattered repeat sequence collinearity analysis genetic relationship 
SynDiv:An efficient tool for chromosome collinearity-based population genomics analyses
《Plant Communications》2024年第12期5-8,共4页Ze-Zhen Du Jia-Bao He Wen-Biao Jiao 
National Natural Science Foundation of China(no.32270685);National Natural Science Fund for Excellent Young Scientists Fund Program(Overseas);"Young Scientist Fostering Funds for the National Key Laboratory for Germplasm Innovation&Utilization of Horticultural Crops."
Dear Editor,The advancement of long-read sequencing technologies has significantly enhanced pan-genome studies,enabling numerous chromosome-level de novo assemblies for a single species(Jiao and Schneeberger,2017;Mark...
关键词：TRAITS CALCULATING ALIGNMENT 
Elevating Localization Accuracy in Wireless Sensor Networks:A Refined DV-Hop Approach
《Computers, Materials & Continua》2024年第10期1511-1528,共18页Muhammad Aamer Ejaz Kamalrulnizam Abu Bakar Ismail Fauzi Bin Isnin Babangida Isyaku Taiseer Abdalla Elfadil Eisa Abdelzahir Abdelmaboud Asma Abbas Hassan Elnour 
supported by the Deanship of Research and Graduate Studies at King Khalid University through a Large Research Project under grant number RGP.2/259/45.
Localization is crucial in wireless sensor networks for various applications,such as tracking objects in outdoor environments where GPS(Global Positioning System)or prior installed infrastructure is unavailable.Howeve...
关键词：LOCALIZATION anchor nodes COLLINEARITY CONNECTIVITY hop based 
Comprehensive cross cancer analyses reveal mutational signature cancer specificity
《Quantitative Biology》2024年第3期245-254,共10页Rui Xin Limin Jiang Hui Yu Fengyao Yan Jijun Tang Yan Guo 
Division of Cancer Prevention,National Cancer Institute,Grant/Award Number:P30CA240139。
Mutational signatures refer to distinct patterns of DNA mutations that occur in a specific context or under certain conditions.It is a powerful tool to describe cancer etiology.We conducted a study to show cancer hete...
关键词：cancer specificity collinearity analysis DNA mutational signatures machine learning 
WGDI:A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes被引量：29
《Molecular Plant》2022年第12期1841-1851,共11页Pengchuan Sun Beibei Jiao Yongzhi Yang Lanxing Shan Ting Li Xiaonan Li Zhenxiang Xi Xiyin Wang Jianquan Liu 
This work was supported equally by the Strategic Priority Research Program of the Chinese Academy of Sciences(XDB31000000);the National Natural Science Foundation of China(grant numbers 31590821 and 91731301 to J.L.and 32070669to X.W.);the National Key Research and Development Program of China(2017YFC0505203 to Z.X.);also by the Fundamental Research Funds for the Central Universities(SCU2019D013 and 2020SCUNL207)and theNational High-Level Talents Special Support Plan(10 Thousand People Plan)。
Evidence of whole-genome duplications(WGDs)and subsequent karyotype changes has been detected in most major lineages of living organisms on Earth.To clarify the complex resulting multi-layered patterns of gene colline...
关键词：WGDI POLYPLOIDY COLLINEARITY inference of hierarchical and event-related gene collinearity ancestral chromosome karyotype 
Genome-wide analysis of expansins and their role in fruit spine development in cucumber(Cucumis sativus L.)被引量：6
《Horticultural Plant Journal》2022年第6期757-768,共12页Xiaoping Liu Shaoyun Dong Han Miao Kailiang Bo Caixia Li Yingying Yang Xingfang Gu Shengping Zhang 
supported by the earmarked fund for Modern Agro-industry Technology Research System (CARS-23);the National Natural Science Foundation of China (31672172);The Agricultural Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences (CAAS-ASTIP-IVFCAAS);the Key Laboratory of Biology and Genetic Improvement of Horticultural Crops,Ministry of Agriculture and Rural Affairs,China。
Cucumber is one of the most widely consumed vegetables worldwide,and the fruit spine is an important fruit quality trait.Expansins play critical roles in fruit development;however,the regulation of expansins in cucumb...
关键词：CUCUMBER EXPANSINS Phylogenetic analysis COLLINEARITY Gene expression Fruit spine 
Functional structure analysis and genome‑wide identification of CNX gene family in cotton
《Journal of Cotton Research》2022年第3期285-301,共17页XU Nan ZHANG Hong ZHANG Yuexin FAN Yapeng WANG Jing MALIK Waqar Afzal RUI Cun HAN Mingge LU Xuke CHEN Xiugui WANG Junjuan WANG Delong WANG Shuai CHEN Chao GUO Lixue ZHAO Lanjie YE Wuwei 
supported by the Agricultural Science and Technology Innovation Program of Chinese Academy of Agricultural Sciences,and Supported by China Agriculture Research System of MOF and MARA.
Background:Under abiotic stress conditions,cotton growth is inhibited and yield losses are severe.Identification of calnexin family members and function analysis under abiotic stress laid the foundation for the screen...
关键词：CALNEXIN GhCNX Conserved motifs Selection pressure COLLINEARITY Differential expression 
Vehicle Positioning Based on Optical Camera Communication in V2I Environments被引量：2
《Computers, Materials & Continua》2022年第8期2927-2945,共19页Pankaj Singh Huijin Jeon Sookeun Yun Byung Wook Kim Sung-Yoon Jung 
supported by the National Research Foundation of Korea(NRF)grant funded by the Korean government(NRF-2018R1A2B6002204).
Demand for precise vehicle positioning(VP)increases as autonomous vehicles have recently been drawing attention.This paper proposes a scheme for positioning vehicles on the move based on optical camera communication(O...
关键词：Optical camera communication vehicle-to-infrastructure LED streetlight intelligent transport system vehicle positioning COLLINEARITY 
Identification of candidate genes related to soluble sugar contents in soybean seeds using multiple genetic analyses被引量：1
《Journal of Integrative Agriculture》2022年第7期1886-1902,共17页PAN Wen-jing HAN Xue HUANG Shi-yu YU Jing-yao ZHAO Ying QU Ke-xin ZHANG Ze-xin YIN Zhen-gong QI Hui-dong YU Guo-long ZHANG Yong XIN Da-wei ZHU Rong-sheng LIU Chun-yan WU Xiao-xia JIANG Hong-wei HU Zhen-bang ZUO Yu-hu CHEN Qing-shan QI Zhao-ming 
financially supported by the National Natural Science Foundation of China(31701449,31971968,31971899,and 31501332);the Natural Science Foundation of Heilongjiang,China(QC2017013);the National Key R&D Program of China(2016YFD0100500,2016YFD0100300 and 2016YFD0100201-21);the Special Financial Aid to PostDoctor Research Fellow in Heilongjiang,China(LBHTZ1714);the International Postdoctoral Exchange Fellowship Program of China Postdoctoral Council(20180004);the China Post Doctoral Project,China(2015M581419);the Post-Doctoral Project of Northeast Agricultural University,China(NEAUBH-19002);the Heilongjiang Funds for Distinguished Young Scientists,China(JC2016004 and JC2017006);the Dongnongxuezhe Project,China(to Chen Qingshan);the the Backbone of Young Talent Scholar Project(to Qi Zhaoming,18XG01)of Northeast Agricultural University,China。
Soluble sugar content in seeds is an important quality trait of soybean. In this study, 57 quantitative trait loci(QTLs) related to soluble sugar contents in soybean seeds were collected from databases and published p...
关键词：soybean soluble sugar contents consensus QTL meta-overview-collinearity integrated analysis population validation RNA-seq and candidate gene mining 
Improved Gossypium raimondii genome using a Hi-C-based proximity-guided assembly
《Journal of Cotton Research》2021年第3期261-267,共7页YANG Qiuhong ZUO Dongyun CHENG Hailiang ZHANG Youping WANG Qiaolian JAVARIA Ashraf FENG Xiaoxu LI Simin CHEN Xiaoqin LIU Shang SONG Guoli 
Introduction:Genome sequence plays an important role in both basic and applied studies.Gossypium raimondii,the putative contributor of the D subgenome of upland cotton(G.hirsutum,highlights the need to improve the gen...
关键词：Gossypium raimondii Hi-C Genome assembly Heatmap and collinearity 
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