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Phylogenetic and molecular dating analyses of Chinese endemic genus Dipelta(Caprifoliaceae)based on nuclear RAD-Seq and chloroplast genome data: 《Journal of Systematics and Evolution》2025年第1期170-182,共13页Ya-Nan Cao Meng-Hao Wang Hang Ran Bin Tian Lu-Xian Liu Qing-Nan Wu Yan-Yan Liu Hong-Wei Wang Shan-Shan Zhu; supported by the National Natural Science Foundation of China(Grant Nos.31800179,32001086,and 31670389).; Dipelta Maxim.(Caprifoliaceae)is a Tertiary relic genus endemic to China,which includes three extant species,Dipelta floribunda,Dipelta yunnanensis,and Dipelta elegans.Recent progress in the systematics and phylogeogr...; 关键词：coalescent modeling ENDEMISM introgressive hybridization molecular dating phylogenetic discordance PHYLOGENOMICS

Acute coalescent mastoiditis in a 16-month-old child due to Streptococcus pneumoniae infection: 《Journal of Acute Disease》2024年第1期36-39,共4页Magdalena Pszczołowska Monika Morawska-Kochman Katarzyna Resler Katarzyna Pękalska Tomasz Zatoński; Rationale:Acute otitis media is a common disease in early childhood,and is usually caused by Streptococcus pneumoniae(S.pneumoniae).Acute mastoiditis is a complication of acute otitis media and can involve not only th...; 关键词：Acute otitis media Acute coalescent mastoiditis Streptococcus pneumoniae Children Case report

Systematics of the avian family Alaudidae using multilocus and genomic data: 《Avian Research》2023年第2期137-152,共16页Per Alstrom Zeinolabedin Mohammadi Erik D.Enbody Martin Irestedt Derek Engelbrecht Pierre-Andre Crochet Alban Guillaumet Loïs Rancilhac B.Irene Tieleman Urban Olsson Paul F.Donald Martin Stervander; the National Swedish Research Council(grants No.2015-04402,2019-04486);the Carl Trygger Foundation(CTS 20:6);the Jornvall Foundation;Julian Francis for financial support;the National Genomics Infrastructure in Stockholm funded by Science for Life Laboratory,the Knut and Alice Wallenberg Foundation;the Research/Scientific Computing teams at The James Hutton Institute and NIAB for providing computational resources and technical support for the"UK's Crop Diversity Bioinformatics HPC"(BBSRC grant BB/S019669/1)。; The family Alaudidae,larks,comprises 93-100 species(depending on taxonomy)that are widely distributed across Africa and Eurasia,with single species extending their ranges to North and northernmost South America and Au...; 关键词：Phylogeny PHYLOGENOMICS Multispecies coalescent Lark PARAPHYLY Taxonomy Subfamily description

Comparing the transmission potential from sequence and surveillance data of 2009 North American influenza pandemic waves: 《Infectious Disease Modelling》2023年第1期240-252,共13页Venkata R.Duvvuri Joseph T.Hicks Lambodhar Damodaran Martin Grunnill Thomas Braukmann Jianhong Wu Jonathan B.Gubbay Samir N.Patel Justin Bahl; National Institutes of Health(NIH)Centers for Excellence in Influenza Research and Surveillance(contract#HHSN272201400006C);National Institute of Allergy and Infectious Diseases,National Institutes of Health,Department of Health and Human Services,under Contract No.75N93021C00018(NIAID Centers of Excellence for Influenza Research and Response,CEIRR)。; Technological advancements in phylodynamic modeling coupled with the accessibility of real-time pathogen genetic data are increasingly important for understanding the infectious disease transmission dynamics.In this s...; 关键词：PHYLODYNAMICS Pandemic 2009 H1N1 Reproduction number Coalescent growth models Birth-death models Pathogen sequence data Public health

Integrating coalescent-based species delimitation with ecological niche modeling delimited two species within the Stewartia sinensis complex (Theaceae)被引量：1: 《Journal of Systematics and Evolution》2022年第5期1037-1048,共12页Han-Yang Lin Kai-Jie Gu Wen-Hao Li Yun-Peng Zhao; This work was supported by the National Natural Science Foundation of China(Grant Nos.31461123001 and 3151101152)。; Accurate species delimitation is the key to precise estimation of species diversity and is fundamental to most branches of biology.Unclear species boundaries within species complexes could lead to the underestimation ...; 关键词：integrative taxonomy multispecies coalescent niche diferentiation species complex Stewartia sinensis Stewartia gemmata

Parapatric speciation with recurrent gene flow of two sexual dichromatic pheasants: 《Avian Research》2022年第2期137-144,共8页Zheng Li Jie Zhou Minzhi Gao Wei Liang Lu Dong; supported by the National Natural Science Foundation of China(No.31471987);approved by College of Life Sciences,Beijing Normal University:No.CLSEAW-2013-007。; Understanding speciation has long been a fundamental goal of evolutionary biology.It is widely accepted that speciation requires an interruption of gene flow to generate strong reproductive isolation between species.T...; 关键词：Approximate Bayesian Computation Gene flow Golden Pheasant(Chrysolophus pictus) Lady Amherst’s Pheasant(Chrysolophus amherstiae) Pairwise Sequentially Markovian Coalescent SPECIATION

Ecological specialization promotes diversity and diversification in the Eastern Mediterranean genus Ricotia (Brassicaceae)被引量：1: 《Journal of Systematics and Evolution》2022年第2期331-343,共13页Barış Özüdoğru Çağaşan Karacaoğlu Galip Akaydın Sadık Erik Klaus Mummenhoff İsmail Kudret Sağlam; This study was supported by Hacettepe University Scientific Research Projects Coordination Unit(Projects no.011D03601002,01301704001,and FBI-2018-17147)。; Despite its amazing biodiversity,the Eastern Mediterranean remains a highly understudied region when compared with the Western Mediterranean,restricting our understanding of diversity across the entire Mediterranean.H...; 关键词：ANATOLIA ancestral area reconstruction ecological niche modeling multi-species coalescent niche differentiation PHYLOGEOGRAPHY Pleistocene refugia

Multispecies coalescent and its applications to infer species phylogenies and cross-species gene flow: 《National Science Review》2021年第12期81-98,共18页Xiyun Jiao Tomas Flouri Ziheng Yang; supported by Biotechnology and Biological Sciences Research Council grants (BB/P006493/1 and BB/T003502/1) to Z.Y。; Multispecies coalescent(MSC) is the extension of the single-population coalescent model to multiple species. It integrates the phylogenetic process of species divergences and the population genetic process of coalesce...; 关键词：anomaly zone BPP deep coalescence gene flow Markov chain Monte Carlo multispecies coalescent species tree

Molecular evolution and genetic diversity analysis of SFTS virus based on next-generation sequencing被引量：8: 《Biosafety and Health》2021年第2期105-115,共11页Aqian Li Lin Liu Wei Wu Yang Liu Xiaoxia Huang Chuan Li Di Liu Jiandong Li Shiwen Wang Dexin Li Mifang Liang; supported by the National Major Science and Technol-ogy Project of China(2018ZX10711001,2016ZX10004222-002)。; SFTS virus(SFTSV)is a novel bunyavirus,which was discovered as the etiological agent of severe fever with thrombocytopenia syndrome(SFTS)in China in 2009,and was now prevalent in at least 25 provinces in China.SFTS wa...; 关键词：SFTS virus(SFTSV) Next-generation sequencing GENOTYPE Reassortment and recombination COALESCENT

Investigating species boundaries in Colletotrichum被引量：10: 《Fungal Diversity》2021年第2期107-127,共21页Chitrabhanu S.Bhunjun Chayanard Phukhamsakda Ruvishika S.Jayawardena Rajesh Jeewon Itthayakorn Promputtha Kevin D.Hyde; the Thailand Research Fund,grant RDG6130001 entitled“Impact of climate change on fungal diversity and biogeography in the Greater Mekong Subregion”;the support from University of Mauritius and the Mauritius Research and Innovative Council(MRC/RUN/1705);RS Jayawardena thanks the National Research Council of Thailand,grant for new researcher NRCT5-TRG630010-01,entitled“Biodiversity,taxonomy,phylogeny and evolution of Colletotrichum in northern Thailand”.; Colletotrichum is one of the most important plant pathogenic genera that is responsible for numerous diseases which can have a profound impact on the agricultural sector.Species delineation is difficult due to a lack ...; 关键词：BEAST General mixed yule coalescent method Glomerellaceae Multi-rate poisson tree process SORDARIOMYCETES Taxonomy

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