RESEQUENCING

作品数：58被引量：295H指数：8
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相关领域：农业科学生物学更多>>
相关机构：华中农业大学更多>>
相关期刊：《Journal of Animal Science and Biotechnology》《Journal of Ocean University of China》《Science China(Life Sciences)》《Plant Diversity》更多>>
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Whole‑genome resequencing to investigate the genetic diversity and mechanisms of plateau adaptation in Tibetan sheep
《Journal of Animal Science and Biotechnology》2025年第2期531-550,共20页Xue Li Buying Han Dehui Liu Song Wang Lei Wang Quanbang Pei Zian Zhang Jincai Zhao Bin Huang Fuqiang Zhang Kai Zhao Dehong Tian 
supported by the Natural Science Foundation of Qinghai Province(No.2022-ZJ-901);the National Breeding Joint Research Project。
Introduction Tibetan sheep,economically important animals on the Qinghai–Tibet Plateau,have diversified into numerous local breeds with unique characteristics through prolonged environmental adaptation and selective ...
关键词：Altitude adaptation DOMESTICATION Genetic selection Population genetic structure Tibetan sheep Whole-genome sequencing 
Reevaluating statistical methods in metabolomic studies:A case for Spearman’s correlation
《Molecular Plant》2025年第3期383-383,共1页Yoshiyasu Takefuji 
Dear Editor,Recently,Liang et al.(2024)conducted comprehensive genome resequencing and metabolomic analyses of 299 representative accessions from extant citrus species,offering an extensive overview of genetic diversi...
关键词：correlation analysis Spearman s correlation metabolomic studies genetic diversity metabolic profiles metabolomic analyses genome resequencing annotated metabolites metabolite content 
Whole-genome analysis reveals distinct adaptation signatures to diverse environments in Chinese domestic pigs
《Journal of Animal Science and Biotechnology》2024年第5期1866-1880,共15页Zhen Wang Bangmin Song Jianyu Yao Xingzheng Li Yan Zhang Zhonglin Tang Guoqiang Yi 
supported by the National Key Research and Development Program of China(2021YFF1000600);the National Natural Science Foundation of China(32002150 and U23A20229);the Basic and Applied Basic Research Foundation of Guangdong Province(2020B1515120053);the Shenzhen Science and Technology Innovation Commission(JCYJ20190813114401691);the Central Government Guiding Funds for Local Science and Technology Development of China(He-Ke ZY220603);the Open Project of Hainan Provincial Key Laboratory of Tropical Animal Reproduction&Breeding and Epidemic Disease Research(HKL2020101)。
Background Long-term natural and artificial selection has resulted in many genetic footprints within the genomes of pig breeds across distinct agroecological zones.Nevertheless,the mechanisms by which these signatures...
关键词：Environmental adaptation Local Chinese breeds PIG Population genetics Selection signals Whole-genome resequencing 
Whole-genome resequencing identifies candidate genes and allelic variation in the MdNADP-ME promoter that regulate fruit malate and fructose contents in apple被引量：1
《Plant Communications》2024年第9期168-183,共16页Weihong Fu Lin Zhao Wanjun Qiu Xu Xu Meng Ding Liming Lan Shenchun Qu Sanhong Wang 
upported by the National Key Research and Development Program of China,“Physiological basis and regulation of fruit tree quality and high yield”(2019YFD1000103);a Project Funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions(PAPD).
Soluble sugar and organic acids are key determinants of fruit organoleptic quality and directly affect the commodity value and economic returns of fruit crops.We performed whole-genome sequencing of the apple varietie...
关键词：APPLE quantitative trait locus malate degradation sugar content PROMOTER 
Whole-genome resequencing of Hu sheep identifies candidate genes associated with agronomic traits被引量：1
《Journal of Genetics and Genomics》2024年第8期866-876,共11页Liming Zhao Lvfeng Yuan Fadi Li Xiaoxue Zhang Huibin Tian Zongwu Ma Deyin Zhang Yukun Zhang Yuan Zhao Kai Huang Xiaolong Li Jiangbo Cheng Dan Xu Xiaobin Yang Kunchao Han Xiuxiu Weng Weimin Wang 
supported by the National Key Research and Development Program of China(2021YFD1300901,2022YFD1302000);National Natural Science Foundation of China(32260818,31960653)。
The phenotypic diversity resulting from artificial or natural selection of sheep has made a significant contribution to human civilization.Hu sheep are a local sheep breed unique to China with high reproductive rates ...
关键词：Hu sheep Whole-genome resequencing Selection signature GPR35 NAV1 Single nucleotide polymorphism 
Utilizing resequencing big data to facilitate Brassica vegetable breeding:tracing introgression pedigree and developing highly specific markers for clubroot resistance被引量：1
《Horticultural Plant Journal》2024年第3期771-783,共13页Zhiyong Ren Jinquan Li Xingyu Zhang Xingxu Li Junhong Zhang Zhibiao Ye Yuyang Zhang Qijun Nie 
supported by the China Agriculture Research System(Grant No.CARS-23-A13);Hubei Agrotechnical Major Project(Grant No.2021-620-000-001-01);Wuhan Major Project of Key Technologies in Biological Breeding and New Variety Cultivation(Grant No.2022021302024852);HZAU-AGIS Cooperation Fund(Grant No.SZYJY2023022).
Clubroot caused by Plasmodiophora brassicae is a devastating disease of Cruciferous crops.Developing cultivars with clubroot resistance(CR)is the most effective control measure.For the two major Brassica vegetable spe...
关键词：BRASSICA Clubroot resistance RESEQUENCING Introgression analysis Molecular marker 
Cryptic divergences and repeated hybridizations within the endangered “living fossil” dove tree(Davidia involucrata) revealed by whole genome resequencing
《Plant Diversity》2024年第2期169-180,共12页Yumeng Ren Lushui Zhang Xuchen Yang Hao Lin Yupeng Sang Landi Feng Jianquan Liu Minghui Kang 
supported by the Second Tibetan Plateau Scientific Expedition and Research program (No. 2019QZKK0502);Strategic Priority Research Program of Chinese Academy of Sciences (No. XDB31010300);Fundamental Research Funds for the Central Universities;International Collaboration 111 Program (BP0719040)。
The identification and understanding of cryptic intraspecific evolutionary units(lineages) are crucial for planning effective conservation strategies aimed at preserving genetic diversity in endangered species.However...
关键词：Davidia involucrata Cryptic lineage HYBRIDIZATION Population genomics Positive evolution 
Deciphering the population structure and genetic basis of growth traits from whole-genome resequencing of the leopard coral grouper(Plectropomus leopardus)
《Zoological Research》2024年第2期329-340,共12页Shao-Xuan Wu Qi-Fan Zeng Wen-Tao Han Meng-Ya Wang Hui Ding Ming-Xuan Teng Ming-Yi Wang Pei-Yu Li Xin Gao Zhen-Min Bao Bo Wang Jing-Jie Hu 
supported by the National Key Research and Development Program of China (2022YFD2400501);Key R&D Project of Hainan Province (ZDYF2021XDNY133);Project of Sanya Yazhouwan Science and Technology City Management Foundation (SKJC-2020-02-009);PhD Scientific Research and Innovation Foundation of Sanya Yazhou Bay Science and Technology City (HSPHDSRF-2022-02-007);Young Elite Scientists Sponsorship Program by CAST (2023QNRC001)。
The leopard coral grouper(Plectropomus leopardus)is a species of significant economic importance.Although artificial cultivation of P.leopardus has thrived in recent decades,the advancement of selective breeding has b...
关键词：Plectropomus leopardus Whole-genome resequencing Growth Haplotype reference panel Single nucleotide polymorphisms 
Genome assembly and resequencing analyses provide new insights into the evolution, domestication and ornamental traits of crape myrtle被引量：2
《Horticulture Research》2023年第9期39-54,共16页Yang Zhou Tangchun Zheng Ming Cai Lu Feng Xiufeng Chi Ping Shen Xin Wang Zhiting Wan Cunquan Yuan Man Zhang Yu Han Jia Wang Huitang Pan Tangren Cheng Qixiang Zhang 
supported by National Key R&D Program of China(2019YFD1001004,2019YFD1000402);the program for Science and Technology of Beijing(Z181100002418006);the Special Fund for Beijing Common Construction Project.
Crape myrtle(Lagerstroemia indica)is a globally used ornamental woody plant and is the representative species of Lagerstroemia.However,studies on the evolution and genomic breeding of L.indica have been hindered by th...
关键词：BREEDING EVOLUTION FLOWERS 
Skim resequencing finely maps the downy mildew resistance loci RPF2 and RPF3 in spinach cultivars whale and Lazio被引量：1
《Horticulture Research》2023年第6期110-120,共11页Gehendra Bhattarai Ainong Shi Beiquan Mou James C.Correll 
This research was supported by a USDA-SCRI grant(2017-51181-26830);a USDA-AMS SCMP grant(16SCCMAR0001);the USDA NIFA Hatch project(ARK0VG2018 and ARK02440)to AS.
Commercial production of spinach(Spinacia oleracea L.)is centered in California and Arizona in the US,where downy mildew caused by Peronospora effusa is the most destructive disease.Nineteen typical races of P.effusa ...
关键词：SPINACH resistance CULTIVAR 
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