HAPLOTYPE

作品数：252被引量：959H指数：12
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A haplotype-resolved genome assembly of tetraploid Medicago sativa ssp.falcata
《Science China(Life Sciences)》2025年第4期1186-1189,共4页Wanying Li Xuanzhao Li Wei Li Haibo Yang Diandian Guo Ting Guo Yingying Meng Qiang He Hao Lin Huilong Du Lifang Niu 
supported by Biological Breeding-National Science and Technology Major Project(2023ZD04073);the National Natural Science Foundation of China(32341022,32325035);Fundamental Research Funds for Central Nonprofit Scientific Institution(1610392024008);Hainan Seed Industry Laboratory(B23CJ0208);Hohhot Key R&D Project(2023-JBGS-S-1);Inner Mongolia Center of Pratacultural Technology Innovation(CCPTZX2023B01)。
Dear Editor,High-yield,high-quality,and stress-tolerant forage crops are crucial for the sustainable development of grass-based livestock husbandry.Medicago species are among the most important legume forage crops wor...
关键词：grass based livestock husbandry high yield tetraploid medicago sativa ssp falcata sustainable development stress tolerant forage crops haplotype resolved genome assembly forage crops high quality 
Haplotype-resolved genome of a papeda provides insights into the geographical origin and evolution of Citrus
《Journal of Integrative Plant Biology》2025年第2期276-293,共18页Fusheng Wang Shaohua Wang Yilei Wu Dong Jiang Qian Yi Manman Zhang Hong Yu Xiaoyu Yuan Mingzhu Li Guijie Li Yujiao Cheng Jipeng Feng Xiaoli Wang Chunzhen Cheng Shiping Zhu Renyi Liu 
supported by the China Agriculture Research System(CARS-Citrus),Fundamental Research Funds for the Central Universities(Grant No.SWU120021);the National Natural Science Foundation of China(Nos.32060664,31901995);funds from Fujian Agriculture and Forestry University,and Fundamental Research Funds for the Central Universities(SWU-XDJH202308)。
The publication of several high-quality genomes has contributed greatly to clarifying the evolution of citrus.However,due to their complex genetic backgrounds,the origins and evolution of many citrus species remain un...
关键词：CITRUS DOMESTICATION evolution haplotype-resolved genome papeda 
A haplotype-resolved genome reveals the genetic basis of spine formation in Atelerix albiventris
《Journal of Genetics and Genomics》2024年第12期1529-1532,共4页Libo Jiang Jianing Xu Mengyuan Zhu Zhongfan Lv Zemin Ning Fengtang Yang 
supported by the National Natural Science Foundation of China(32370689 and 32070601);the Natural Science Fund for Excellent Young Scholars of Shandong Province(ZR2022YQ23)。
Hedgehogs,small nocturnal mammals of the Erinaceinae subfamily,play a crucial role in maintaining ecological balance(Hernandez,2008;Taucher et al.,2020).Atelerix albiventris(A.albiventris),a species native to West and...
关键词：smallest utilized RESOLVED 
Haplotype-resolved genome of a heterozygous wild peach reveals the PdaWRKY4-PdaCYP716A1 module mediates resistance to aphids by regulating betulin biosynthesis
《Journal of Integrative Plant Biology》2024年第12期2716-2735,共20页Jun-Xiu Wang Yong Li Xin-Wei Wang Ke Cao Chang-Wen Chen Jin-Long Wu Wei-Chao Fang Geng-Rui Zhu Xue-Jia Chen Dan-Dan Guo Jiao Wang Ya-Lin Zhao Jia-Qi Fan Su-Ning Liu Wen-Qing Li Hang-Ling Bie Qiang Xu Li-Rong Wang 
supported by the National Key Research and Development Program(2023YFE0105400);Central Public-interest Scientific Institution Basal Research Fund(Y2022QC23);the Agricultural Science and Technology Innovation Program(CAAS-ASTIP-2023-ZFRI-01);Natural Science Foundation of Henan(232300421042);the Crop Germplasm Resources Conservation Project(2016NWB041);the National Natural Science Foundation of China(32402492);the National Key Research and Development Program(2019YFD1000200).
Wild species of domesticated crops provide valuable genetic resources for resistance breeding.Prunus davidiana,a wild relative of peach with high heterozygosity and diverse stress tolerance,exhibits high resistance ag...
关键词：allele-specific expression aphid resistance hap-lotype genome PdaWRKY4 PEACH 
The LpHsfA2-molecular module confers thermotolerance via fine tuning of its transcription in perennial ryegrass(Lolium perenne L.)被引量：1
《Journal of Integrative Plant Biology》2024年第11期2346-2361,共16页Guangjing Ma Zhihao Liu Shurui Song Jing Gao Shujie Liao Shilong Cao Yan Xie Liwen Cao Longxing Hu Haichun Jing Liang Chen 
supported by the National Key R&D Program of China(2022YFF1003200);the National Natural Science Foundation of China(NSFC)(Grant Nos.32001394,32102431 and 32101430);the Science&Technology Specific Projects in Agricultural High-tech Industrial Demonstration Area of the Yellow River Delta(Grant No.2022SZX13);the Strategic Priority Research Program of Chinese Academy of Sciences(Grant No.XDA26050201);the Major Science and Technology Innovation Project of Shandong Province(2022LZGC018)。
Temperature sensitivity and tolerance play a key role in plant survival and production.Perennial ryegrass(Lolium perenne L.),widely cultivated in cool-season for forage supply and turfgrass,is extremely susceptible to...
关键词：HAPLOTYPE heat shock transcription factors heat tolerance perennial ryegrass 
The haplotype-resolved T2T genome assembly of the wild potato species Solanum commersonii provides molecular insights into its freezing tolerance被引量：1
《Plant Communications》2024年第10期1-4,共4页Yang Feng Jie Zhou Dianjue Li Zhen Wang Cheng Peng Guangtao Zhu 
supported by the National Key Research and Development Program of China(2022YFF1002500);the Guangdong Major Project of Basic and Applied Basic Research(2021B0301030004);the National Natural Science Foundation of China(U2002204,31970586,and 32170662);the Yunnan Fundamental Research Project(202401AS070131).
Dear Editor,The potato is the most important tuber crop,playing an important role in ensuring world food security.The genome of the cultivated species(DM,a doubled monoploid type)was first released in 2011 and has bee...
关键词：CULTIVATED FREEZING doubled 
Haplotype-resolved T2T genome assemblies and pangenome graph of pear reveal diverse patterns of allele-specific expression and the genomic basis of fruit quality traits被引量：1
《Plant Communications》2024年第10期100-120,共21页Qionghou Li Xin Qiao Lanqing Li Chao Gu Hao Yin Kaijie Qi Zhihua Xie Sheng Yang Qifeng Zhao Zewen Wang Yuhang Yang Jiahui Pan Hongxiang Li Jie Wang Chao Wang Loren H.Rieseberg Shaoling Zhang Shutian Tao 
funded by the National Key Research and Development Program of China(2022YFF1003100-02);the National Natural Science Foundation of China(32172511);the Jiangsu Agricultural Science and Technology Innovation Fund(CX(22)2025);the Natural Science Foundation of Jiangsu Province(BK20210397);the Seed Industry Promotion Project of Jiangsu(JBGS(2021)022);the Guidance Foundation of the Hainan Institute of Nanjing Agricultural University(NAUSY-MS08);the Project Funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions,the Jiangsu Provincial Key Research and Development Program(BE2023365);the Earmarked Fund for China Agriculture Research System(CARS-28).This study was supported by the High-Performance Computing Platform of the Bioinformatics Center,Nanjing Agricultural University.
Hybrid crops often exhibit increased yield and greater resilience,yet the genomic mechanism(s)underlying hybrid vigor or heterosis remain unclear,hindering our ability to predict the expression of phenotypic traits in...
关键词：PEAR haplotype-resolved assembly allele-specific expression fruit quality traits pangenome graph 
Multi-genome evolutionary study of the ABC1 gene family and identification of the pleiotropic effects of OsABC1-13 in rice development
《The Crop Journal》2024年第4期1022-1030,共9页Fuying Ma Mingyu Liu Peiwen Yan Shicong He Jian Hu Xinwei Zhang Fuan Niu Jinhao Cui Xinyu Yuan Xiaoyun Xin Liming Cao Jinshui Yang Ying Wang Xiaojin Luo 
supported by the Innovation Program of the Shanghai Municipal Education Commission(2023ZKZD05);the Shanghai Oriental Talent(Rural Revitalization)Top Talent Project(T2023102).
In four rice genomes,85 ABC1-family genes were identified by comparative genomics,evolution,genetics,and physiology.One,OsABC1-13,was shown by knockdown and knockout experiments to affect plant height,grain size,and p...
关键词：Multi-genome analysis Activity of bc1 complex gene PHOTOSYNTHESIS BIOMASS Osabc1-13 HAPLOTYPE 
Analysis of Phenotypes Associated with Deficiency of PAX6 Haplotypes in Chinese Aniridia Families
《Current Medical Science》2024年第4期820-826,共7页Xiao-lu HAO Ran CHEN Wei LIU Bao-ke HOU Ling-hui QU Zhao-hui LI Da-jiang WANG Xin JIN Hou-bin HUANG 
Objective To examine the clinical phenotype and genetic deficiencies present in Chinese aniridia families with PAX6 haplotype deficiency.Methods A comprehensive questionnaire and ophthalmological assessments were admi...
关键词：ANIRIDIA PAX6 mutation haplotype deficiency PHENOTYPE genotype 
Exploring the genetic basis of pre-harvest sprouting in rice through a genome-wide association study-based haplotype analysis
《Journal of Integrative Agriculture》2024年第8期2525-2540,共16页Myeong-Hyeon Min Aye Aye Khaing Sang-Ho Chu Bhagwat Nawade Yong-Jin Park 
supported by the National Research Foundation of Korea(NRF)grants funded by the Ministry of Science and Information and Communication Technology(MSIT),Republic of Korea(NRF2022R1A4A1030348 and 2023R1A2C1004432);the Korea Institute of Planning and Evaluation for Technology in Food,Agriculture and Forestry(IPET)through the Digital Breeding Transformation Technology Development Program,funded by the Ministry of Agriculture,Food and Rural Affairs(MAFRA),Republic of Korea(322060031HD020);the Cooperative Research Program for Agriculture Science and Technology Development,Rural Development Administration,Republic of Korea(RS-2023-00222739)。
Pre-harvest sprouting(PHS)poses a significant global challenge to cereal production,impacting both yield and quality.In this study,we employed genome-wide association studies(GWAS)on diverse rice accessions to identif...
关键词：RICE PHS DORMANCY GERMINATION GWAS HAPLOTYPE abiotic stress 
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