GENOME-WIDE

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Grain Protein Content Phenotyping in Rice via Hyperspectral Imaging Technology and a Genome-Wide Association Study
《Plant Phenomics》2024年第3期684-695,共12页Hengbiao Zheng Weijie Tang Tao Yang Meng Zhou Caili Guo Tao Cheng Weixing Cao Yan Zhu Yunhui Zhang Xia Yao 
supported by the National Key Research and Development Program of China(2021YFD2000100);the National Natural Science Foundation of China(32101617);the Fundamental Research Funds for the Central Universities(JSJL2023005);the Zhongshan Biological Breeding Laboratory(ZSBBL-KY2023-05);the Key Independent Research Project of Jjiangsu Key Laboratory of Information Agriculture(KLIAZZ2301);the Jiangsu Collaborative Innovation Center for Modern Crop Production(JCICMCP).
Efficient and accurate acquisition of the rice grain protein content(GPC)is important for selecting high-quality rice varieties,and remote sensing technology is an attractive potential method for this task.However,the...
关键词：ASSOCIATION technology content imaging protein GRAIN study RICE GENOME-WIDE HYPERSPECTRAL 
Genome-wide binding analysis of transcription factor Rice Indeterminate 1 reveals a complex network controlling rice floral transition被引量：1
《Journal of Integrative Plant Biology》2022年第9期1690-1705,共16页Shuo Zhang Li Deng Lun Zhao Changyin Wu 
supported by the National Natural Science Foundation of China(32070855,31821005);the Foundation of Hubei Hongshan Laboratory(2021hszd010)。
RICE INDETERMINATE 1(RID1)plays a critical role in controlling floral transition in rice(Oryza sativa).However,the molecular basis for this effect,particularly the target genes and regulatory specificity,remains large...
关键词：CHIP-SEQ floral transition OsERF#136 rice(Oryza sativa) RID1 RNA-seq 
Genome-wide selection and introgression of Chinese rice varieties during breeding
《Journal of Genetics and Genomics》2022年第5期492-501,共10页Jinyue Ge Junrui Wang Hongbo Pang Fei Li Danjing Lou Weiya Fan Ziran Liu Jiaqi Li Danting Li Baoxuan Nong Zongqiong Zhang Yanyan Wang Jingfen Huang Meng Xing Yamin Nie Xiaorong Xiao Fan Zhang Wensheng Wang Jianlong Xu Sung Ryul Kim Ajay Kohli Guoyou Ye Weihua Qiao Qingwen Yang Xiaoming Zheng 
supported by the National Key Research and Development Program of China(2016YFD0100301 to Z.X.M.);the National Natural Science Foundation of China(31670211 and31970237 to Z.X.M.);Sanya Yazhou Bay Science and Technology City(SKJC-2020-02-001 to Z.X.M.);the Central Public-interest Scientific Institution Basal Research Fund(S2021ZD01 to Z.X.M.);the Major Incubation Project of Shenyang Normal University(ZD20210 to P.H.B.);the Hundred Talent Program of Shenyang Normal University(SSDBRJH2002012 to P.H.B.)。
China is the largest rice-producing country,but the genomic landscape of rice diversity has not yet been clarified.In this study,we re-sequence 1070 rice varieties collected from China(400)and other regions in Asia(67...
关键词：RICE Genome selection INTROGRESSION Agronomic traits BREEDING 
Genome-wide pedigree analysis of elite rice Shuhui 527 reveals key regions for breeding
《Journal of Integrative Agriculture》2021年第1期35-45,共11页REN Yun CHEN Dan LI Wen-jie TAO Luo YUAN Guo-qiang CAO Ye LI Xue-mei DENG Qiming WANG Shi-quan ZHENG Ai-ping ZHU Jun LIU Huai-nian WANG Ling-xia LI Ping LI Shuang-cheng 
supported by the Sichuan Science and Technology Support Project, China (2016NZ0103);the National Natural Science Foundation of China (91435102 and 31570004);the Sichuan Provincial Founding for Distinguished Young Scholars, China (2015JQ0048);the Open Research Fund of State Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, China (2016KF10)。
Hybrid rice significantly contributes to the food supply worldwide. Backbone parents play important roles in elite hybrid rice breeding systems. In this study, we performed pedigree-based analysis of the elite backbon...
关键词：backbone parent Shuhui 527 SNPS genome-wide association study 
Genome-wide transcriptome analysis of roots in two rice varieties in response to alternate wetting and drying irrigation被引量：3
《The Crop Journal》2020年第4期586-601,共16页Tao Song Debatosh Das Feng Yang Moxian Chen Yuan Tian Chaolin Cheng Chao Sun Weifeng Xu Jianhua Zhang 
supported by the National Key Research and Development Program of China(2017YFE0118100 and 2018YFD02003025);the National Natural Science Foundation of China(31761130073 and 31872169);the China Postdoctoral Science Foundation(2019M663122);the Shenzhen Virtual University Park Support Scheme to Shenzhen Research Institute of the Chinese University of Hong Kong,the Natural Science Foundation of Hunan Province(2019JJ50263);the Hong Kong Research Grant Council(Ao E/M-05/12,Ao E/M-403/16,CUHK14122415,14160516,and 14177617)。
Alternate wetting and drying(AWD)irrigation has been widely used as an efficient rice production method to obtain better yield without continuous flooding(CF)of the paddy field.However,how this practice affects gene e...
关键词：CULTIVAR PADDY ROOTS 
Genome-Wide Association Analysis and Allelic Mining of Grain Shape-Related Traits in Rice
《Rice science》2019年第6期384-392,共9页LV Yang WANG Yueying Noushin JAHAN HU Haitao CHEN Ping SHANG Lianguang LIN Haiyan DONG Guojun HU Jiang GAO Zhenyu QIAN Qian ZHANG Yu GUO Longbiao 
supported by the Natural Science Foundation of China(Grant Nos.31461143014,31771778 and 31801336);the National Key Research and Development Program of China(Grant No.2016YFD0100902-07);the China Postdoctoral Science Foundation(Grant No.2018M641556);the Zhejiang Provincial Natural Science Foundation of China(Grant No.LGN19C130006)
Excavating single nucleotide polymorphisms (SNPs) significantly associated with rice grain shape and predicting candidate genes through genome-wide association study (GWAS) can provide a theoretical basis for discover...
关键词：CANDIDATE gene grain shape GENOME-WIDE association study HAPLOTYPE RICE single NUCLEOTIDE POLYMORPHISM 
Physiological and genome-wide gene expression analyses of cold-induced leaf rolling at the seedling stage in rice(Oryza sativa L.)被引量：2
《The Crop Journal》2019年第4期431-443,共13页Jingfang Dong Junliang Zhao Shaohong Zhang Tifeng Yang Qing Liu Xingxue Mao Hua Fu Wu Yang Bin Liu 
supported in part by the Ph.D. Start-up Fund of Natural Science Foundation of Guangdong Province, China (2015A030310419);the Guangdong Scientific and Technological Plan (2015B020231002, 2017A070702006, 2017A020208022);the Guangzhou Scientific and Technological Plan (201804020078);the Guangdong-Hong Kong joint project (2017A050506035);the Development Project of Guangdong Provincial Key Lab (2017B030314173);the Special Fund of Central Government Guided Local Scientific Development
Leaf rolling and discoloration are two chilling-injury symptoms that are widely used as indicators for the evaluation of cold tolerance at the seedling stage in rice. However, the difference in cold-response mechanism...
关键词：Rice(Oryza sativa L.) Cold-induced LEAF yellowing Cold-induced LEAF rolling PHYSIOLOGICAL analysis GENOME-WIDE expression profiling 
Construction of a Genome-Wide Mutant Library in Rice Using CRISPR/Cas9被引量：56
《Molecular Plant》2017年第9期1238-1241,共4页Meng, Xiangbing Yu, Hong Zhang, Yi Zhuang, Fengfeng Song, Xiaoguang Gao, Songsong Gao, Caixia Li, Jiayang 
Dear Editor Rice （Oryza sativa L.） is one of the world＇s most important staple crops and a powerful model system for studying monocot spe- cies because of its relatively small genome, rich genomic re- sources, and ...
Genome-wide Targeted Mutagenesis in Rice Using the CRISPR/Cas9 System被引量：50
《Molecular Plant》2017年第9期1242-1245,共4页Lu, Yuming Ye, Xiao Guo, Renming Huang, Jing Wang, Wei Tang, Jiuyou Tan, Longtao Zhu, Jian-kang Chu, Chengcai Qian, Yangwen 
Dear Editor Since the completion of the rice （Oryza sativa） genome- sequencing project, a major goal of rice research has been the functional characterization of all annotated genetic loci in various biological proc...
Genome-wide Association Analyses Reveal the Genetic Basis of Stigma Exsertion in Rice被引量：20
《Molecular Plant》2017年第4期634-644,共11页Hao Zhou Pingbo Li WeiboXie Saddam Hussain Yibo Li Duo Xia Hu Zhao Shengyuan Sun Junxiao Chen Hong Ye Jun Hou Da Zhao Guanjun Gao Qinglu Zhang Gongwei Wang Xingming Lian Jinghua Xiao Sibin Yu Xianghua Li Yuqing He 
Stigma exsertion, a key determinant of the rice mating system, greatly contributes to the application of heterosis in rice. Although a few quantitative trait loci associated with stigma exsertion have been fine map- p...
关键词：stigma exsertion GWAS hybrid seed production floral traits grain shape RICE 
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