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Diploid species phylogeny and evolutionary reticulation indicate early radiation of Ephedra in the Tethys coast被引量：1: 《Journal of Integrative Plant Biology》2023年第12期2619-2630,共12页Qiong Yu Fu-Sheng Yang Ya-Xing Chen Hui Wu Stefanie M.Ickert-Bond Xiao-Quan Wang; This study was supported by the Strategic Priority Research Program,CAS(XDA23080000);National Key R&D Program of China(2017YFA0605100);Key Research Program of Frontier Sciences,CAS(QYZDJ-SSW-SMC027).; Reconstructing a robust species phylogeny and disentangling the evolutionary and biogeographic history of the gymnosperm genus Ephedra,which has a large genome and rich polyploids,remain a big challenge.Here we recons...; 关键词：ALLOPOLYPLOIDY biogeography EPHEDRA PHYLOGENOMICS phylogeny reticulate evolution

Phylogenomic conflict analyses in the apple genus Malus s.l.reveal widespread hybridization and allopolyploidy driving diversification,with insights into the complex biogeographic history in the Northern Hemisphere被引量：3: 《Journal of Integrative Plant Biology》2022年第5期1020-1043,共24页Bin-Bin Liu Chen Ren Myounghai Kwak Richard GJHodel Chao Xu Jian He Wen-Bin Zhou Chien-Hsun Huang Hong Ma Guan-Ze Qian De-Yuan Hong Jun Wen; National Natural Science Foundation of China supports this research (32000163 and 31620103902); Phylogenomic evidence from an increasing number of studies has demonstrated that different data sets and analytical approaches often reconstruct strongly supported but conflicting relationships.In this study,785 singl...; 关键词：deep genome skimming genomic discordance historical biogeography massive extinction reticulate evolution single-copy nuclear genes

Endo-allopolyploidy of autopolyploids and recurrent hybridization—A possible mechanism to explain the unresolved Y-genome donor in polyploid Elymus species (Triticeae:Poaceae): 《Journal of Systematics and Evolution》2022年第2期344-360,共17页Quan-Lan Liu Lu Liu Song Ge Li-Ping Fu Shi-Qie Bai Xin Lv Qian-Kun Wang Wang Chen Fan-Ye Wang Li-Hong Wang Xue-Bing Yan Bao-Rong Lu; This research was supported by the National Natural Science Foundation of China(31872995).; The genus Elymus L.in the tribe Triticeae(Poaceae)includes economically and ecologically important forage grasses.The genus contains the pivotal St genome from Pseudoroegneria in combination with other genomes in the ...; 关键词：ALLOTETRAPLOID ELYMUS endo-allopolyploidy polyploidy recurrent hybridization single-copy nuclear gene

Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica: 《Journal of Systematics and Evolution》2021年第5期953-963,共11页Yves Bawin Tom Ruttink Ariane Staelens Annelies Haegeman Piet Stoffelen Jean-Claude Ithe Mwanga Mwanga Isabel Roldan-Ruiz Olivier Honnay Steven B.Janssens; valuable comments that improved the manuscript.This research was funded by Research Foundation-Flanders(FWO)(Project No.G056517N).; Interspecific hybridization events have played a major role in plant speciation,yet the evolutionary origin of hybrid species often remains enigmatic.Here,we inferred the evolutionary origin of the allotetraploid spec...; 关键词：ALLOPOLYPLOIDY Coffea arabica(Arabica coffee) SELF-COMPATIBILITY

Genomic mosaicism due to homoeologous exchange generates extensive phenotypic diversity in nascent allopolyploids被引量：3: 《National Science Review》2021年第5期17-31,共15页Ying Wu Fan Lin Yao Zhou Jie Wang Shuai Sun Bin Wang Zhibin Zhang Guo Li Xiuyun Lin Xutong Wang Yue Sun Qianli Dong Chunming Xu Lei Gong Jonathan F.Wendel Zhiwu Zhang Bao Liu; supported by the National Key Research and Development Program of China(2016YFD0102003 to B.L.);the National Natural Science Foundation of China(91131000 to B.L and 31900197 to Y.W.);the China Postdoctoral Science Foundation(2018M631853 and 2019T120228 to Y.W.);the US National Science Foundation(to J.F.W.)。; Allopolyploidy is an important process in plant speciation,yet newly formed allopolyploid species typically suffer from extreme genetic bottlenecks.One escape from this impasse might be homoeologous meiotic pairing,du...; 关键词：nascent allopolyploidy homoeologous recombination phenotypic diversity plant evolution GWAS dosage effects EPISTASIS

Maintenance of Species Differences in Closely Related Tetraploid Parasitic Euphrasia (Orobanchaceae) on an Isolated Island: 《Plant Communications》2020年第6期85-99,共15页Hannes Becher Max R.Brown Gavin Powell Chris Metherell Nick J.Riddifordand Alex D.Twyford; funded by NERC grants(NE/R010609/1,NE/L011336/1,NE/N006739/1)awarded to A.D.T.; Polyploidy is pervasive in angiosperm evolution and plays important roles in adaptation and speciation.However,polyploid groups are understudied due to complex sequence homology,challenging genome assembly,and taxonom...; 关键词：incipient speciation k-mer spectrum ALLOPOLYPLOIDY TETRAPLOID divergence with gene flow taxonomic complexity

Identification of Flowering Regulatory Genes in Allopolyploid Brassica juncea被引量：8: 《Horticultural Plant Journal》2019年第3期109-119,共11页Ning Zhao Chang Liu Yiqing Meng Zhongyuan Hu Mingfang Zhang Jinghua Yang; supported by the grant from the National Natural Science Foundation of China (31872095); Brassica juncea is an allopolyploid originating from the interspecific hybridization between Brassica rapa and Brassica nigra, which is of multiple usage as a vegetable, oilseed and condiment worldwide. Both vernaliza...; 关键词：Brassica JUNCEA ALLOPOLYPLOIDY Flower VERNALIZATION PHOTOPERIOD

Comparative effect of allopolyploidy on transposable element composition and gene expression between Gossypium hirsutum and its two diploid progenitors被引量：2: 《Journal of Integrative Plant Biology》2019年第1期45-59,共15页Hua Cheng Gaofei Sun Shoupu He Wenfang Gong Zhen Peng Ruiping Wang Zhongxu Lin Xiongming Du; supported by the International Cooperation Program of Henan Provincial Bureau of Foreign Experts Affairs Authority(2016GH18);the National Key R&D Program of China(2017YFD0101600,2016YFD0100203);the Foundation and Frontier Research Grant of Henan Provincial Science and Technology Bureau(162300410171);the Research Fund Project of Anyang Institute of Technology(YJJ2015013); An allopolyploidization event formed allotetraploid Gossypium species from an A-genome diploid species and a D-genome diploid species. To explore the responses of transposable elements(TEs) to allopolyploidy, we assem...; 关键词：progenitors ALLOPOLYPLOIDIZATION

Chromosome number variation and polyploidy in 19 Kaempferia （Zingiberaceae） taxa from Thailand and one species from Laos被引量：1: 《Journal of Systematics and Evolution》2017年第5期466-476,共11页Nattapon Nopporncharoenkul Jatuporn Chanmai Thaya Jeniittikul Kesara Anamthawat-Jonsson Puangpaka Soontornchainaksaeng; Several Kaempferia species, endemic to Thailand, are rare and therefore entitled to conservation status; other species are widely cultivated. We conducted extensive cytogenetic investigation of this genus to elucidate...; 关键词：ALLOPOLYPLOIDY AUTOPOLYPLOIDY chromosome number Kaempferia meiotic figure Zingiberaceae.

Characterizing the allopolyploid species among the wild relatives of soybean： Utility of reduced representation genotyping methodologies被引量：2: 《Journal of Systematics and Evolution》2017年第4期365-376,共12页Sue Sherman-Broyles Aureliano Bombarely Jeff Doyle; Allopolyploidy is a common feature in many angiosperm genera. The perennial wild relatives of soybean in the genus Glycine include at least nine recently formed （within the last million years） allopolyploid taxa. Th...; 关键词：ALLOPOLYPLOIDY GBS legumes network analysis.

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