GENOMIC

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Genomes of Meniocus linifolius and Tetracme quadricornis reveal the ancestral karyotype and genomic features of core Brassicaceae
《Plant Communications》2024年第7期68-89,共22页Jie Liu Shi-Zhao Zhou Yun-Long Liu Bin-Yan Zhao Dongmei Yu Mi-Cai Zhong Xiao-Dong Jiang Wei-Hua Cui Jiu-Xia Zhao Juan Qiu Liang-Min Liu Zhen-Hua Guo Hong-Tao Li Dun-Yan Tan Jin-Yong Hu De-Zhu Li 
supported by the Priority Research Program of the Chinese Academy of Sciences(CAS)(Grant No.XDA0440000 and XDB31000000).
Brassicaceae represents an important plant family from both a scientific and economic perspective.However,genomic features related to the early diversification of this family have not been fully characterized,especial...
关键词：CRUCIFERAE genomic features ancient hybridization core Brassicaceae karyotype CBK TREHALOSE-6-PHOSPHATE SYNTHASE 1 genes TPS1s 
Genomic insights into the origin and evolution of spelt(Triticum spelta L.)as a valuable gene pool for modern wheat breeding被引量：1
《Plant Communications》2024年第5期75-90,共16页Yongfa Wang Zihao Wang Yongming Chen Tianyu Lan Xiaobo Wang Gang Liu Mingming Xin Zhaorong Hu Yingyin Yao Zhongfu Ni Qixin Sun Weilong Guo Huiru Peng 
supported by the National Natural Science Foundation of China (31991210);the National Key Research and Development Program of China (2021YFD1200104);the Strategic International Science and Technology Innovation Collaboration Project (2020YFE0202300);the 2115 Talent Development Program of China Agricultural University,the Pinduoduo-China Agricultural University Research Fund (PC2023 B01016);the China National Postdoctoral Program for Innovative Talents (BX20230414).
Spelt(Triticum aestivum ssp.spelta)is an important wheat subspecies mainly cultivated in Europe before the 20th century that has contributed to modern wheat breeding as a valuable genetic resource.However,relatively l...
关键词：WHEAT SPELT interspecific hybridization gene pool modern wheat breeding 
Genomic and phenotypic signatures provide insights into the wide adaptation of a global plant invader被引量：1
《Plant Communications》2024年第4期275-290,共16页Yan Hao Xin-Feng Wang Yaolin Guo Tian-Yang Li Ji Yang Malika LAinouche Armel Salmon Rui-Ting Ju Ji-Hua Wu Lin-Feng Li Bo Li 
supported by the National Key Research and Development Program of China (2022YFC2601100 to B.L.);the Natural Science Foundation of China (32030067 to J.-H.W.,31970235 to L.-F.L.,32171661 to R.-T.J.,and 31961133028 to B.L.).
Invasive alien species are primary drivers of biodiversity loss and species extinction.Smooth cordgrass(Spartina alterniflora)is one of the most aggressive invasive plants in coastal ecosystems around the world.Howeve...
关键词：ADAPTATION natural selection invasive species population genomics Spartina alterniflora 
Genomic evolution and insights into agronomic trait innovations of Sesamum species被引量：1
《Plant Communications》2024年第1期262-283,共22页Hongmei Miao Lei Wang Lingbo Qu Hongyan Liu Yamin Sun Meiwang Le Qiang Wang Shuangling Wei Yongzhan Zheng Wenchao Lin Yinghui Duan Hengchun Cao Songjin Xiong Xuede Wang Libin Wei Chun Li Qin Ma Ming Ju Ruihong Zhao Guiting Li Cong Mu Qiuzhen Tian Hongxian Mei Tide Zhang Tongmei Gao Haiyang Zhang 
supported by earmarked funding for the China Agricultural Research System of MOF and MARA (CARS-14),China;the China National"973"Project (2011CB109304),China;the Henan Zhongyuan Scientist Work Station Construction Fund (092101211100),China;the National Natural Science Foundation of China (U1204318,U1304321,31301653,31471537,and 32172094),China;the Key Project of Science and Technology of Henan Province (201300110600),China;the Key Research Project of the Shennong Laboratory (SN01-2022-04),China;the Key Research and Development Project of Henan Province (221111520400),China;the Innovation Scientists and Technicians Troop Construction Project of the Henan Academy of Agricultural Sciences (2023TD04),China.
Sesame is an ancient oilseed crop with high oil content and quality.However,the evolutionary history and genetic mechanisms of its valuable agronomic traits remain unclear.Here,we report chromosome-scale genomes of cu...
关键词：Sesamum genome evolution structural variation plant architecture Fusarium wilt disease oil content 
Genomic clines across the species boundary between a hybrid pine and its progenitor in the eastern Tibetan Plateau
《Plant Communications》2023年第4期240-254,共15页Jing-Fang Guo Wei Zhao Bea Andersson Jian-Feng Mao Xiao-Ru Wang 
supported by grants from the Swedish Research Council(VR 2017-04686);T4F program,Sweden.
Most species have clearly defined distribution ranges and ecological niches.The genetic and ecological causes of species differentiation and the mechanisms that maintain species boundaries between newly evolved taxa a...
关键词：ecological selection demographic history genomic cline introgression outliers reproductive isolation species boundary 
Fast integration and accumulation of beneficial breeding alleles through an AB–NAMIC strategy in wheat被引量：5
《Plant Communications》2023年第3期66-79,共14页Chengzhi Jiao Chenyang Hao Tian Li Abhishek Bohra Lanfen Wang Jian Hou Hongxia Liu Hong Liu Jing Zhao Yamei Wang Yunchuan Liu Zhiwei Wang Xin Jing Xiue Wang Rajeev K.Varshney Junjie Fu Xueyong Zhang 
supported by the National Key Research and Development Program of China(2022YFD1201503 and 2016YFD0100302);the National Major Agricultural Science and Technology Project(NK2022060101).
Wheat(Triticum aestivum)is among the most important staple crops for safeguarding the food security of the growing world population.To bridge the gap between genebank diversity and breeding programs,we developed an ad...
关键词：WHEAT GENEBANK AB-NAMIC genome-wide association studies GWAS beneficial alleles genomics-assisted breeding WheatGAB 
The genome of Orychophragmus violaceus provides genomic insights into the evolution of Brassicaceaepolyploidizationandits distinct traits
《Plant Communications》2023年第2期77-92,共16页Kang Zhang Yinqing Yang Xin Zhang Lingkui Zhang Yu Fu Zhongwei Guo Shumin Chen Jian Wu James C.Schnable Keke Yi Xiaowu Wang Feng Cheng 
supported by the National Natural Science Foundation of China(NSFC grants 31722048 and 31972411);the Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences,and the Key Laboratory of Biology and Genetic Improvement of Horticultural Crops,Ministry of Agriculture and Rural Affairs,P.R.China;supported by the China Agricultural Research System—Green Manure(CARS-22).
Orychophragmus violaceus,referred to as‘‘eryuelan’’(February orchid)in China,is an early-flowering ornamental plant.The high oil content and abundance of unsaturated fatty acids in O.violaceus seeds make it a pote...
关键词：Orychophragmus violaceus eryuelan genome assembly POLYPLOIDIZATION subgenome differentiation function innovation 
Genomic imbalance modulates transposable element expression in maize
《Plant Communications》2023年第2期214-226,共13页Hua Yang Xiaowen Shi Chen Chen Jie Hou Tieming Ji Jianlin Cheng James A.Birchler 
supported by National Science Foundation USA grant IOS-1545780;Computation for this work was performed on the highperformance computing infrastructure provided by Research Computing Support Services and in part by the National Science Foundation USA under grant number CNS-1429294 at the University of Missouri,Columbia,MO,https://doi.org/10.32469/10355/69802.
Genomic imbalance refers to the more severe phenotypic consequences of changing part of a chromosome compared with the whole genome set.Previous genome imbalance studies in maize have identified prevalent inverse modu...
关键词：genome imbalance transposable element expression ANEUPLOIDY POLYPLOIDY ClassⅠandⅡTEs 
HTPdb and HTPtools:Exploiting maize haplotypetag polymorphisms for germplasm resource analyses and genomics-informed breeding被引量：2
《Plant Communications》2022年第4期54-63,共10页Yikun Zhao Hongli Tian Chunhui Li Hongmei Yi Yunlong Zhang Xiaohui Li Han Zhao Yongxue Huo Rui Wang Dingming Kang Yuncai Lu Zhihao Liu Ziyue Liang Liwen Xu Yang Yang Ling Zhou Tianyu Wang Jiuran Zhao Fengge Wang 
supported by grants from the 13th Five-Year National Key R&D Program of China(2017YFD0102001).
Along with rapid advances in high-throughput-sequencing technology,the development and application of molecular markers has been critical for the progress that has been made in crop breeding and genetic research.Desir...
关键词：haplotype tag database MAIZE pedigree reconstruction heterotic-pattern prediction genomicsinformed breeding 
The chromosome-level genome assembly of Astragalus sinicus and comparative genomic analyses provide new resources and insights for understanding legume-rhizobial interactions被引量：1
《Plant Communications》2022年第2期62-75,共14页Danna Chang Songjuan Gao Guopeng Zhou Shuhan Deng Jizeng Jia Ertao Wang Weidong Cao 
This research was financially supported by China Agricultural Research System of MOF and MARA(CARS-22);Chinese Outstanding Talents Pro-gram in Agricultural Science,Agricultural Science and Technology Innova-tion Program of CAAS;China National Crop Germplasm Resources Platform for Green Manure(NICGR-2021-19).
The legume species Astragalus sinicus(Chinese milk vetch[CMV])has been widely cultivated for centuries in southern China as one of the most important green manures/cover crops for improving rice productivity and preve...
关键词：Astragalus sinicus GENOME chalcone synthase(CHS)gene R genes 
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