DEGRADOME

作品数：11被引量：24H指数：3
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相关领域：农业科学生物学更多>>
相关作者：张广鑫更多>>
相关机构：金陵科技学院南京大学更多>>
相关期刊：《Frontiers in Biology》《Horticulture Research》《Journal of Zhejiang University-Science B(Biomedicine & Biotechnology)》《Journal of Integrative Agriculture》更多>>
相关基金：国家自然科学基金国家重点基础研究发展计划徐州市科技计划项目辽宁省科技厅博士启动基金更多>>
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Multi-omics of Circular RNAs and Their Responses to Hormones in Moso Bamboo(Phyllostachys edulis)被引量：1
《Genomics, Proteomics & Bioinformatics》2023年第4期866-885,共20页Yongsheng Wang Huihui Wang Huiyuan Wang Ruifan Zhou Ji Wu Zekun Zhang Yandong Jin Tao Li Markus V.Kohnen Xuqing Liu Wentao Wei Kai Chen Yubang Gao Jiazhi Ding Hangxiao Zhang Bo Liu Chentao Lin Lianfeng Gu 
supported by the National Natural Science Foundation of China(Grant Nos.31971734 and 31800566);the National Key R&D Program of China(Grant No.2021YFD2200505);the Distinguished Young Scholar Program of Fujian Agriculture and Forestry University(Grant No.xjq202017);the Scientific Research Foundation of Graduate School of Fujian Agriculture and Forestry University(Grant No.324-1122yb061);the Forestry Peak Discipline Construction Project of Fujian Agriculture and Forestry University(Grant No.72202200205),China。
Circular RNAs(circRNAs)are endogenous non-coding RNAs with covalently closed structures,which have important functions in plants.However,their biogenesis,degradation,and function upon treatment with gibberellins(GAs)a...
关键词：Alternative splicing Circular RNA DEGRADOME Phyllostachys edulis PHYTOHORMONE 
Multiomics analysis provides new insights into the regulatory mechanism of carotenoid biosynthesis in yellow peach peel被引量：1
《Molecular Horticulture》2023年第1期81-97,共17页Jiarui Zheng Xiaoyan Yang Jiabao Ye Dongxue Su Lina Wang Yongling Liao Weiwei Zhang Qijian Wang Qiangwen Chen Feng Xu 
Open access funding provided by Shanghai Jiao Tong University;Open access funding provided by Shanghai Jiao Tong University;supported by the National Natural Science Foundation of China(No.32201603);the Open Fund of the Guangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region(No.SYFMR2022011Z);the Open Fund of State Key Laboratory of Tree Genetics and Breeding(Chinese Academy of Forestry)(No.TGB2021008);the Scientific Research Program of Hubei Provincial Department of Education(No.B2021044).
Carotenoids,as natural tetraterpenes,play a pivotal role in the yellow coloration of peaches and contribute to human dietary health.Despite a relatively clear understanding of the carotenoid biosynthesis pathway,the r...
关键词：Yellow peach peel CAROTENOID MIRNA MYB DEGRADOME 
Transcriptome and degradome sequencing reveals changes in Populus×euramericana‘Neva’caused by its allelopathic response to p-hydroxybenzoic acid
《Journal of Forestry Research》2021年第5期2155-2168,共14页Guoting Liang Jing Guo Shuyong Zhang Guangcan Zhang 
the National Public Welfare Industry Research Project of China(201504406);National Natural Science Foundation of China(31770706);National Natural Science Foundation of China(31870379);Science Research Projects of Facility Horticulture Laboratory of Universities in Shandong(2018YY031)。
Plant species produce different types of allelopathic chemicals in nature;however,little is known about the differential regulation of plant allelopathy.Because allelopathy caused by p-hydroxybenzoic acid(pHBA)is one ...
关键词：Populus×euramericana‘Neva’ Allelopathic response miRNA TRANSCRIPTOME DEGRADOME 
Integrative genome,transcriptome,microRNA,and degradome analysis of water dropwort(Oenanthe javanica)in response to water stress被引量：4
《Horticulture Research》2021年第1期3396-3412,共17页Jie-Xia Liu Qian Jiang Jian-Ping Tao Kai Feng Tong Li Ao-Qi Duan Hao Wang Zhi-Sheng Xu Hui Liu Ai-Sheng Xiong 
This research was supported by Jiangsu Agricultural Science and Technology Innovation Fund(CX(18)2007);New Century Excellent Talents in University(NCET-11-0670);National Natural Science Foundation of China(31272175);Priority Academic Program Development of Jiangsu Higher Education Institutions Project(PAPD).
Water dropwort(Liyang Baiqin,Oenanthe javanica(BI.)DC.)is an aquatic perennial plant from the Apiaceae family with abundant protein,dietary fiber,vitamins,and minerals.It usually grows in wet soils and can even grow i...
关键词：VITAMIN stress ANALYSIS 
Integrated transcriptome, small RNA, and degradome analysis to elucidate the regulation of rice seedling mesocotyl development during the passage from darkness to light被引量：2
《The Crop Journal》2020年第6期918-928,共11页Yusong Lyu Xiangjin Wei Min Zhong Shipeng Niu Shakeel Ahmad Gaoneng Shao Guiai Jiao Zhonghua Sheng Lihong Xie Shikai Hu Yawen Wu Shaoqing Tang Peisong Hu 
financially supported by the National S&T Major Project of China(2016ZX08001006);the National Key Research and Development Program of China(2016YFD0101801 and 2017YFD0100300);the Agricultural Science and Technology Innovation Program of CAAS。
The mesocotyl,a structure located between the basal part of the seminal root and the coleoptile node of seedlings,contributes to pushing the shoot tip through the soil surface,a function that is essential for the unif...
关键词：Oryza sativa L. MESOCOTYL TRANSCRIPTOME MicroRNAome DEGRADOME 
Characterization and function of Tomato yellow leaf curl virus-derived small RNAs generated in tolerant and susceptible tomato varieties
《Journal of Integrative Agriculture》2016年第8期1785-1797,共13页BAI Miao YANG Guo-shun CHEN Wen-ting LIN Run-mao LING Jian MAO Zhen-chuan XIE Bing-yan 
supported by the Specialized Research Fund for the Doctoral Program of Higher Education of China (20134320120013);the Natural Science Foundation of Hunan Province, China (14JJ3095)
supported by the Specialized Research Fund for the Doctoral Program of Higher Education of China （20134320120013）;the Natural Science Foundation of Hunan Province, China （14JJ3095）
关键词：Tomato yellow leaf curl virus virus-induced RNA silencing virus-derived small RNA degradome 
Profiling human protein degradome delineates cellular responses to proteasomal inhibition and reveals a feedback mechanism in regulating proteasome homeostasis被引量：2
《Cell Research》2014年第10期1214-1230,共17页Tao Yu Yonghui Tao Meiqiang Yang Peng Chen Xiaobo Gao Yanbo Zhang Tao Zhang Zi Chen Jian Hou Yan Zhang Kangcheng Ruan Hongyan Wang Ronggui Hu 
We are grateful to Dr W Bian and her team in Cell Biology Core facility of SIBCB for their excellent support in flow cytometry analysis and cell sorting, and Drs L Lin, Y Xia and H Xiao of National Center for Microarrays for their help in microarray analysis. We are particularly grateful to Dr Hsueh-Chi Yen at Institute of Mol Biol, Academia Sinica, and Dr Ivan Dikic of Goethe University for advice, and Drs Dangsheng Li, Lijian Hui and Jiarui Wu of SIBCB, and Dr Shirley Diamond of California Institute of Tech- nology for helpful discussion. We also thank Dr Ya-lan Wu and all other members of the Hu lab for support. This work was supported by the National Natural Science Foundation of China （31270828, 31070678, 81170491, 81072070 and 81470360）, the 100 Talents award from CAS to RH and the Ministry of Science and Technology, China （2010CB912100, 2012CB910800 and 2013CB910900 to RH, and 2011CB915501 to KR）. RH was also supported by a Sanofi-aventis SIBS Young Investigator award and funding from the Cancer Center of Xuhui Central Hospital （CCR2012003）, Shanghai Institute of Neurosciences （SKLN-201206） and the Instrument Developing Project of the Chinese Academy of Sciences （YZ201339）.
Global change in protein turnover （protein degradome） constitutes a central part of cellular responses to intrin- sic or extrinsic stimuli. However, profiling protein degradome remains technically challenging. Recen...
关键词：BORTEZOMIB combination therapy PROTEOSTASIS protein degradome proteasome homeostasis N-end role ubiquitin 
Analysis of promoters of microRNAs from a Glycine max degradome library被引量：1
《Journal of Zhejiang University-Science B(Biomedicine & Biotechnology)》2014年第2期125-132,共8页Yi-qiang HAN Zheng HU Dian-feng ZHENG Ya-mei GAO 
supported by the National Natural Science Foundation of China(No.31271652);the National Science Foundation for Young Scientists of China(No.31301708)
Objective： MicroRNAs （miRNAs） are genome-encoded, small non-coding RNAs that play important functions in development, biotic and abiotic stress responses, and other processes. Our aim was to explore the regu- latio...
关键词：Glycine max MicroRNA （miRNA） PROMOTER Cis-acting element Prediction 
Analyses of a Glycine max Degradome Library Identify microRNA Targets and MicroRNAs that Trigger Secondary SiRNA Biogenesis被引量：6
《Journal of Integrative Plant Biology》2013年第2期160-176,共17页Zheng Hu Qiyan Jiang Zhiyong Ni Rui Chen Shuo Xu Hui Zhang 
supported by the National High-Tech Research and Development Program of China (2007AA10Z139)
Plant microRNAs （miRNAs） regulate gene expression mainly by guiding cleavage of target mRNAs. In this study, a degradome library constructed from different soybean （Glycine max （L.） Merr.） tissues was deep-seque...
关键词：miRNAs miRNA targets secondary siRNAs DEGRADOME Glycine max. 
Finding MicroRNA Targets in Plants: Current Status and Perspectives被引量：4
《Genomics, Proteomics & Bioinformatics》2012年第5期264-275,共12页Jiandong Ding Shuigeng Zhou Jihong Guan 
supported by Major State Basic Research and Development Program of China (973 Program) (Grant No. 2010CB126604);NSFC (Grant No. 61272380);supported by NSFC (Grant No. 61173118);the Shuguang Program of Shanghai Education Foundation
MicroRNAs （miRNAs）, a class of ～20-24 nt long non-coding RNAs, have critical roles in diverse biological processes including devel- opment, proliferation, stress response, etc. With the development and availability...
关键词：MICRORNA Target prediction Degradome-seq INTEGRATION 
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