GENOME-WIDE

作品数：468被引量：1637H指数：17
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Decoding the chromatin accessibility in Andrographis paniculata genome,a case study of genome-wide investigation of the cis-regulatory elements in medicinal plants
《Acta Pharmaceutica Sinica B》2024年第9期4179-4182,共4页Mingkun Huang Yufang Hu Ling Zhang Hua Yang Chen Feng Chunhong Jiang Ning Xie Difa Liu Shilin Chen Jihua Wang Wei Sun 
the National Natural Science Foundation of China(82260745);Jiangxi Provincial Natural Science Foundation(20232BAB216120,China);Jiangxi Province Major Discipline Academic and Technical Leaders Training Program‒Leading Talents Project(20225BCJ22018,China).
To the Editor:Medicinal plants have the ability to synthesize a large number of pharmaceutical metabolites,the production and regulation of which are influenced by both intrinsic signals(e.g.,the spatial and temporal ...
关键词：Andrographis paniculata Chromatin accessibility Medicinal plant EPIGENETICS ENCODE cis-regulatory elements 
Corrigendum to“CRISPR-detector:fast and accurate detection,visualization,and annotation of genome-wide mutations induced by genome editing events”[Journal of Genetics and Genomics(2023)563-572]
《Journal of Genetics and Genomics》2023年第10期813-813,共1页Lei Huang Dan Wang Haodong Chen Jinnan Hu Xuechen Dai Chuan Liu Anduo Li Xuechun Shen Chen Qi Haixi Sun Dengwei Zhang Tong Chen Yuan Jiang 
This corrigendum clarifies information in the article“CRISPR-detector:fast and accurate detection,visualization,and annotation of genomewide mutations induced by genome editing events”by Huang et al.(2023).In the fi...
关键词：al. Cor INSERTION 
CRISPR-detector:fast and accurate detection,visualization,and annotation of genome-wide mutations induced by genome editing events
《Journal of Genetics and Genomics》2023年第8期563-572,共10页Lei Huang Dan Wang Haodong Chen Jinnan Hu Xuechen Dai Chuan Liu Anduo Li Xuechun Shen Chen Qi Haixi Sun Dengwei Zhang Tong Chen Yuan Jiang 
supported by the Fundamental Research Funds for the Central Public Welfare Research Institutes(ZZ13-YQ-095 and ZZXT201708);the Start-up Research Fund from BNU-HKBU United International College(UICR0700053-23).
The leading-edge CRISPR/CRISPR-associated technology is revolutionizing biotechnologies through genome editing.To track on/off-target events with emerging new editing techniques,improved bioinformatic tools are indisp...
关键词：Genome editing On/off-target Genetic background removal Structural variation 
Genome-wide identification of endogenous retrovirus elements and their active transcription in mink genome
《mLife》2023年第2期201-208,共8页Zheng Li Qing Wang Na Lv Guojin Xu Xuemei Yang Baoli Zhu 
supported by grants from the Strategic Priority Research Program of the Chinese Academy of Sciences(XDB29020203);the National Natural Science Foundation of China(32170068);the Research Project of Jinan Microecological Biomedicine Shandong Laboratory(JNL-2022013B).
Mammalian endogenous retroviruses(ERVs)are ancient retroviruses that have been integrated into genomes.ERVs were believed to be inactive until the discovery of ERV transcription in the mouse genome.However,the transcr...
关键词：endogenous retrovirus MINK TISSUE-SPECIFIC TRANSCRIPTOME 
Genome-Wide Patterns of Codon Usage in the Pacific Oyster Genome
《Journal of Ocean University of China》2021年第5期1175-1182,共8页SONG Kai 
This research was supported by the National Natural Science Foundation of China(No.11701546).
The use of synonymous codons with varying frequencies has been observed in many species,and the magnitude varies among closely related species and genes within the same genome.Mutational processes or natural selective...
关键词：codon bias synonymous codons gene expression nucleotide diversity Crassostrea gigas 
Rice Protein Tagging Project:A Call for International Collaborations on Genome-wide In-Locus Tagging of Rice Proteins被引量：4
《Molecular Plant》2020年第12期1663-1665,共3页Yuming Lu Pamela C.Ronald Bin Han Jiayang Li Jian-Kang Zhu 
the Chinese Academy of Sciences(to J.-K.Z.);the U.S.National Science Foundation Plant Genome Research Program,award no.2027795(to P.C.R.).
In September 1997,the International Rice Genome Sequencing Project was launched.This initiative pooled the resources of ten nations to obtain the first complete rice genome sequence,and promoted rice research and bree...
关键词：BREEDING GENOME ENDOGENOUS 
Genome-wide identification of DNA-PKcs-associated RNAs by RIP-Seq
《Signal Transduction and Targeted Therapy》2019年第1期493-495,共3页Zhiquan Song Ying Xie Zongpei Guo Yang Han Hua Guan Xiaodan Liu Teng Ma Ping-kun Zhou 
This work was supported by grants from the National Key Basic Research Program(973 Program)of MOST,China(Grant No.2015CB910601);the National Natural Science Foundation of China(Grant Nos.31370843 and 31500681)to P.K;Zhou and the National Natural Science Foundation,China(Grant Nos.31570853 and 81602799)to T.Ma.
Dear Editor,The DNA-dependent protein kinase catalytic subunit(DNA-PKcs)forms a serine/threonine protein kinase complex with the Ku heterodimer(Ku70/Ku80)and plays an important role in the DNA damage response(DDR)and ...
关键词：GENOME METABOLISM damage 
Whole Genome Sequencing Progress in Medical Application
《Genetic Disease Study》2018年第2期34-39,共6页Marico Wagner Daphne Benjamin 
At present, there are still a lot of diseases pathogenesis not clear, but making use of a new generation of sequencing technology to organisms conduct whole genome sequencing, which for the pathogenesis of many diseas...
关键词：GENOME-WIDE WHOLE GENOME SEQUENCING WHOLE GENOME SEQUENCING APPLICATIONS 
Genome-wide mining, characterization, and development of microsatellite markers in Marsupenaeus japonicus by genome survey sequencing被引量：1
《Chinese Journal of Oceanology and Limnology》2017年第1期203-214,共12页LU Xia LUAN Sheng KONG Jie HU Longyang MAO Yong ZHONG Shengping 
Supported by the National High Technology Research and Development Program of China(863 Program)(No.2012AA10A409)
The kuruma prawn, Marsupenaeus japonicus, is one of the most cultivated and consumed species of shrimp. However, very few molecular genetic/genomic resources are publically available for it. Thus, the characterization...
关键词：Marsupenaeus japonicus genome-wide SSR markers genome survey sequencing functional annotation 
Characterization of Genome-Wide Microsatellites of Saccharina japonica Based on a Preliminary Assembly of Illumina Sequencing Reads被引量：2
《Journal of Ocean University of China》2016年第3期523-532,共10页ZHANG Linan PENG Jie LI Xiaojie CUI Cuiju SUN Juan YANG Guanpin 
financially supported by National High Technology Research and Development Program(863 Program)of China(2012AA10A406);National Science and Technology Supporting Program of China(2012 BAD55G01);Municipal Science and Technology Research and Development Project of Yantai(2013LGS002);Shandong Province Higher Educational Science and Technology Program(J15LE14)
Microsatellites or simple sequence repeats(SSR) function widely and locate dependently in genome. However, their characteristics are often ignored due to the lack of genomic sequences of most species. Kelp(Saccharina ...
关键词：Saccharinajaponica GENOME MICROSATELLITE CHARACTERIZATION 
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