WHOLE-GENOME

作品数：95被引量：342H指数：10
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相关领域：生物学农业科学更多>>
相关作者：余振华刘元宁郝柏林更多>>
相关机构：信息科学与技术学院中国科学技术大学复旦大学基因组研究所更多>>
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相关基金：国家自然科学基金国家重点基础研究发展计划中国博士后科学基金湖北省自然科学基金更多>>
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Whole-genome methylation reveals tissue-specific differences in non-CG methylation in bovine
《Zoological Research》2024年第6期1371-1384,共14页Jing Wang Wen Yuan Fang Liu Guang-Bo Liu Xiao-Xiong Geng Chen Li Chen-Chen Zhang Nan Li Xue-Ling Li 
supported by the STI 2030-Major Projects(2023ZD0407504)of China;Development Plan for Young Scientific and Technological Talents in Colleges and Universities of Inner Mongolia Autonomous Region of China(NMGIRT2204);National Natural Science Foundation of China(32160172);Science and Technology Major Project of the Inner Mongolia Autonomous Region of China to the State Key Laboratory of Reproductive Regulation(2021ZD0048&2023KYPT0010)。
DNA methylation at non-CG dinucleotides(mCH,H=A,C,T)widely occurs and plays an important role in specific cell types,including pluripotent,neural,and germ cells.However,the functions and regulatory mechanisms of mCH,p...
关键词：EPIGENETICS Non-CG Methylation CHDMRs Comparative Genomics Developmental Biology 
Whole-genome characterization of CKX genes in Prunus persica and their role in bud dormancy and regrowth
《Journal of Integrative Agriculture》2024年第12期4058-4073,共16页Xuehui Zhao Jianting Liu Xiling Fu Long Xiao Qingjie Wang Chaoran Wang ZhizhangChen Jiakui Li Changkun Lu Hui Cao Ling Li 
supported by the National Natural Science Foundation of China(32302509);the Weifang University Doctoral Research Launch Fund,China(2022BS18);the National Natural Science Foundation of China(32072518)。
Bud dormancy is a complex physiological process of perennial woody plants living in temperate regions,and it can be affected by various phytohormones.Cytokinin oxidase/dehydrogenases(CKXs)are a group of enzymes essent...
关键词：PEACH CKX family PpEBB1 DORMANCY bud-break 
Whole-genome analysis reveals distinct adaptation signatures to diverse environments in Chinese domestic pigs
《Journal of Animal Science and Biotechnology》2024年第5期1866-1880,共15页Zhen Wang Bangmin Song Jianyu Yao Xingzheng Li Yan Zhang Zhonglin Tang Guoqiang Yi 
supported by the National Key Research and Development Program of China(2021YFF1000600);the National Natural Science Foundation of China(32002150 and U23A20229);the Basic and Applied Basic Research Foundation of Guangdong Province(2020B1515120053);the Shenzhen Science and Technology Innovation Commission(JCYJ20190813114401691);the Central Government Guiding Funds for Local Science and Technology Development of China(He-Ke ZY220603);the Open Project of Hainan Provincial Key Laboratory of Tropical Animal Reproduction&Breeding and Epidemic Disease Research(HKL2020101)。
Background Long-term natural and artificial selection has resulted in many genetic footprints within the genomes of pig breeds across distinct agroecological zones.Nevertheless,the mechanisms by which these signatures...
关键词：Environmental adaptation Local Chinese breeds PIG Population genetics Selection signals Whole-genome resequencing 
Comparative DNA methylation reveals epigenetic adaptation to high altitude in snub-nosed monkeys
《Zoological Research》2024年第5期1013-1026,共14页Ling Wang Wei-Qiang Liu Juan Du Meng Li Rui-Feng Wu Ming Li 
supported by the National Natural Science Foundation of China(32330015,31821001);Strategic Priority Research Program of the Chinese Academy of Sciences(XDB31000000)。
DNA methylation plays a crucial role in environmental adaptations.Here,using whole-genome bisulfite sequencing,we generated comprehensive genome-wide DNA methylation profiles for the high-altitude Yunnan snub-nosed mo...
关键词：Snub-nosed monkeys Whole-genome bisulfite sequencing DNA methylation High-altitude adaptation 
Streamlined whole-genome genotyping through NGS-enhanced thermal asymmetric interlaced(TAIL)-PCR
《Plant Communications》2024年第9期25-37,共13页Sheng Zhao Yue Wang Zhenghang Zhu Peng Chen Wuge Liu Chongrong Wang Hong Lu Yong Xiang Yuwen Liu Qian Qian Yuxiao Chang 
supported by the Science and Technology Planning Project of Guangdong Province(2022B0202060002);the National Natural Science Foundation of China(32300340,32172086);the R&D program of Shenzhen(KCXFZ20211020164207012);the R&D Program in Key Areas of Guangdong Province(2021B0707010006);ACKNOWLEDGMENTS We thank Lili Dong(China National Center for Bioinformation/Beijing Institute of Genomics,Chinese Academy of Sciences)for assistance with uploading the raw sequencing data.Y.C.,S.Z.,P.C.,et al.are listed as co-inventors on a patent application(CN202211418)。
Whole-genome genotyping(WGG)stands as a pivotal element in genomic-assisted plant breeding.Nevertheless,sequencing-based approaches for WGG continue to be costly,primarily owing to the high expenses associated with li...
关键词：whole-genome genotyping primer-template mismatched annealing specific primer arbitrary degenerate primer molecular breeding 
Whole-genome resequencing identifies candidate genes and allelic variation in the MdNADP-ME promoter that regulate fruit malate and fructose contents in apple被引量：1
《Plant Communications》2024年第9期168-183,共16页Weihong Fu Lin Zhao Wanjun Qiu Xu Xu Meng Ding Liming Lan Shenchun Qu Sanhong Wang 
upported by the National Key Research and Development Program of China,“Physiological basis and regulation of fruit tree quality and high yield”(2019YFD1000103);a Project Funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions(PAPD).
Soluble sugar and organic acids are key determinants of fruit organoleptic quality and directly affect the commodity value and economic returns of fruit crops.We performed whole-genome sequencing of the apple varietie...
关键词：APPLE quantitative trait locus malate degradation sugar content PROMOTER 
Whole-genome resequencing of Hu sheep identifies candidate genes associated with agronomic traits被引量：1
《Journal of Genetics and Genomics》2024年第8期866-876,共11页Liming Zhao Lvfeng Yuan Fadi Li Xiaoxue Zhang Huibin Tian Zongwu Ma Deyin Zhang Yukun Zhang Yuan Zhao Kai Huang Xiaolong Li Jiangbo Cheng Dan Xu Xiaobin Yang Kunchao Han Xiuxiu Weng Weimin Wang 
supported by the National Key Research and Development Program of China(2021YFD1300901,2022YFD1302000);National Natural Science Foundation of China(32260818,31960653)。
The phenotypic diversity resulting from artificial or natural selection of sheep has made a significant contribution to human civilization.Hu sheep are a local sheep breed unique to China with high reproductive rates ...
关键词：Hu sheep Whole-genome resequencing Selection signature GPR35 NAV1 Single nucleotide polymorphism 
Safety assessment of a novel marine multi-stress-tolerant yeast Meyerozyma guilliermondii GXDK6 according to phenotype and whole genome-sequencing analysis
《Food Science and Human Wellness》2024年第4期2048-2059,共12页Xueyan Mo Mengcheng Zhou Yanmei Li Lili Yu Huashang Bai Peihong Shen Xing Zhou Haojun Zhu Huijie Sun Ru Bu Chengjian Jiang 
This research was supported by the Funding Project of Chinese Central Government Guiding to the Guangxi Local Science and Technology Development(GUIKEZY21195021);the Natural Science Fund for Distinguished Young Scholars of Guangxi Zhuang Autonomous Region of China(2019GXNSFFA245011);the Funding Project of Chinese Central Government Guiding to the Nanning Local Science and Technology Development(20231012);the Funding Projects of Guangxi Key Research and Development Plan(GUIKE AB23075173);the Funding Project of Technological Development from Angel Yeast(Chongzuo)Co.,Ltd.(JS1006020230722019);the Innovation Project of Guangxi Graduate Education(YCBZ2021012).
The application of microorganisms as probiotics is limited due to lack of safety evaluation.Here,a novel multi-stress-tolerant yeast Meyerozyma guilliermondii GXDK6 with aroma-producing properties was identified from ...
关键词：Meyerozyma guilliermondii Safety assessment PROBIOTICS Marine mangrove microorganisms Whole-genome sequencing analysis 
Epigenetic control on transcription of vernalization genes and whole-genome gene expression profile induced by vernalization in common wheat
《Plant Diversity》2024年第3期386-394,共9页Yunzhen Li Liujie Jin Xinyu Liu Chao He Siteng Bi Sulaiman Saeed Wenhao Yan 
supported by Project 2662020ZKPY002 supported by the Fundamental Research Funds for the Central Universities.
Vernalization is necessary for winter wheat to flower.However,it is unclear whether vernalization is also required for spring wheat,which is frequently sown in fall,and what molecular mechanisms underlie the vernaliza...
关键词：WHEAT VERNALIZATION VRN1 Histone modification Regulate network 
Deciphering the population structure and genetic basis of growth traits from whole-genome resequencing of the leopard coral grouper(Plectropomus leopardus)
《Zoological Research》2024年第2期329-340,共12页Shao-Xuan Wu Qi-Fan Zeng Wen-Tao Han Meng-Ya Wang Hui Ding Ming-Xuan Teng Ming-Yi Wang Pei-Yu Li Xin Gao Zhen-Min Bao Bo Wang Jing-Jie Hu 
supported by the National Key Research and Development Program of China (2022YFD2400501);Key R&D Project of Hainan Province (ZDYF2021XDNY133);Project of Sanya Yazhouwan Science and Technology City Management Foundation (SKJC-2020-02-009);PhD Scientific Research and Innovation Foundation of Sanya Yazhou Bay Science and Technology City (HSPHDSRF-2022-02-007);Young Elite Scientists Sponsorship Program by CAST (2023QNRC001)。
The leopard coral grouper(Plectropomus leopardus)is a species of significant economic importance.Although artificial cultivation of P.leopardus has thrived in recent decades,the advancement of selective breeding has b...
关键词：Plectropomus leopardus Whole-genome resequencing Growth Haplotype reference panel Single nucleotide polymorphisms 
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