RNASEQ

作品数：19被引量：38H指数：3
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相关领域：医药卫生农业科学更多>>
相关作者：黄金艳陈冰陈赛娟李科焦杨更多>>
相关机构：河北农业大学天津金域医学检验实验室有限公司中山大学南宁科城汇信息科技有限公司更多>>
相关期刊：《Horticulture Research》《International Journal of Oral Science》《Radiation Medicine and Protection》《Insect Science》更多>>
相关基金：国家自然科学基金河北省应用基础研究计划The Royal Society福建省自然科学基金更多>>
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Single-cell RNA sequencing reveals the heterogeneity and interactions of immune cells and Müller glia during zebrafish retina regeneration
《Neural Regeneration Research》2025年第12期3635-3648,共14页Hui Xu Lining Cao Yuxi Chen Cuiping Zhou Jie Xu Zhuolin Zhang Xiangyu Li Lihua Liu Jianfeng Lu 
supported by the National Natural Science Foundation of China,Nos.81970820(to HX),31771644(to JL),31930068(to JL),82371176(to JL),81801331(to LC);National Key Research and Development Project of China.Nos.2017YFA0104100(to JL),2017YFA0701304(to HX);Shanghai Yangzhi Rehabilitation Hospital(Shanghai Sunshine Rehabilitation Center)Talent Introduction Plan,No.KYPT202204(to LC);the Fundamental Research Funds for the Central Universities,No.22120230292(to JL)。
Inflammation plays a crucial role in the regeneration of fish and avian retinas.However,how inflammation regulates Müller glia(MG)reprogramming remains unclear.Here,we used single-cell RNA sequencing to investigate t...
关键词：immune cells inflammation Jak1-Stat3 signaling microglia Müller glia REGENERATION reprogramming RETINA single-cell RNAseq ZEBRAFISH 
Transcriptional profiling during infection of potato NLRs and Phytophthora infestans effectors using cDNA enrichment sequencing被引量：1
《The Crop Journal》2025年第1期31-40,共10页Amanpreet Kaur Vikrant Singh Stephen Byrne Miles Armstrong Thomas M.Adams Brian Harrower Eleanor Gilroy Ewen Mullins Ingo Hein 
supported by the Rural & Environment Science & Analytical Services (RESAS) Division of the Scottish Government through project JHI-B1-1;the Biotechnology and Biological Sciences Research Council (BBSRC) through awards BB/ S015663/1;BB/X009068/1;Research Leaders 2025 fellowship funded by European Union’s Horizon 2020 research and innovation programme under Marie Sklodowska-Curie grant agreement no. 754380;the Research/Scientific Computing teams at The James Hutton Institute and NIAB for providing computational resources and technical support for the “UK’s Crop Diversity Bioinformatics HPC” (BBSRC grant BB/ S019669/1)。
An accurate assessment of host and pathogen gene expression during infection is critical for understanding the molecular aspects of host-pathogen interactions.Often,pathogen-derived transcripts are difficult to ascert...
关键词：RxLR effector NLRS Late blight POTATO cDNA sequencing RenSeq PenSeq RNASEQ 
In silico analysis of lncRNA-miRNA-mRNA signatures related to Sorafenib effectiveness in liver cancer cells
《World Journal of Gastroenterology》2025年第3期84-102,共19页Patricia de la Cruz-Ojeda Ester Parras-Martínez Raquel Rey-Pérez Jordi Muntané 
Supported by Instituto de Salud Carlos III(ISCiii),No.PI19/01266 and No.PI22/00857;Consejería de Salud y Familias(Junta de Andalucía),No.PI-0216-2020 and No.PIP-0215-2020;Biomedical Research Network Center for Liver and Digestive Diseases(CIBERehd)founded by the ISCIII and co-financed by European Regional Development Fund“A way to achieve Europe”ERDF.
BACKGROUND Hepatocellular carcinoma(HCC)is the most common subtype of primary liver cancer with varied incidence and epidemiology worldwide.Sorafenib is still a recommended treatment for a large proportion of patients...
关键词：Cell culture Hepatocellular carcinoma Non-coding RNA RNASEQ SORAFENIB 
Visfatin(NAMPT)affects global gene expression in porcine anterior pituitary cells during the mid-luteal phase of the oestrous cycle
《Journal of Animal Science and Biotechnology》2024年第6期2293-2315,共23页Kamil Dobrzyn Grzegorz Kopij Marta Kiezun Ewa Zaobidna Marlena Gudelska Barbara Zarzecka Lukasz Paukszto Agnieszka Rak Nina Smolinska Tadeusz Kaminski 
supported by the Polish National Science Center research grants:OPUS 16[grant number:2018/31/B/NZ9/00781];OPUS 20[grant number:2020/39/B/NZ9/01061]and SONATA 16[grant number:2020/39/D/NZ9/01009]。
Background The pituitary belongs to the most important endocrine glands involved in regulating reproductive functions.The proper functioning of this gland ensures the undisturbed course of the oestrous cycle and affec...
关键词：Alternative splicing Anterior pituitary Differentially expressed genes lncRNA Oestrous cycle Pig RNASEQ TRANSCRIPTOME VISFATIN 
Expression profiles of east–west highly differentiated genes in Uyghur genomes被引量：1
《National Science Review》2023年第4期51-63,共13页Zhilin Ning Xinjiang Tan Yuan Yuan Ke Huang Yuwen Pan Lei Tian Yan Lu Xiaoji Wang Ruicheng Qi Dongsheng Lu Yajun Yang Yaqun Guan Dolikun Mamatyusupu Shuhua Xu 
the Basic Science Center Program(32288101 to S.X.);the National Natural Science Foundation of China(NSFC)grants(32030020,31771388 and 31961130380to S.X.);the UK Royal Society-Newton Advanced Fellowship(NAFR1191094 to S.X.);the Shanghai Municipal Science and Technology Major Project(2017SHZDZX01 to S.X.)。
It remains unknown and debatable how European-Asian–differentiated alleles affect individual phenotypes.Here,we made the first effort to analyze the expression profiles of highly differentiated genes with eastern and...
关键词：gene expression RNASEQ Xinjiang's Uyghurs next-generation sequencing 
Altered gene expression in human brain microvascular endothelial cells in response to the infection of influenza H1N1 virus
《Animal Diseases》2023年第1期1-20,共20页Doaa Higazy Xianwu Lin Tanghui Xie Ke Wang Xiaochen Gao Min Cui 
the financial support provided by the National Program on Key Research Project of China(2016YFD0500406);the National Natural Sciences Foundation of China(Grant No.31872455);the Fundamental Research Funds for the Central Universities(2662018PY016);the Start-up Research Fund from Huazhong Agricultural University.
Influenza viruses not only cause respiratory illness,but also have been reported to elicit neurological manifestations following acute viral infection.The central nervous system(CNS)has a specific defense mechanism ag...
关键词：Blood-brain barrier Influenza A virus(IAV) hBMECs CNS Neurodegenerative diseases RNASEQ 
An integrative analysis of metabolomics,DNA methylation and RNASeq data reveals key genes involved in albino tea'Haishun 2'被引量：3
《Beverage Plant Research》2022年第1期10-18,共9页Kang Wei Shuping Yu Qili Quan Shirin Aktar Mengdi He Yazhen Zhang Huihan Fang Rongmei Wu Li Ruan Peng Mao Peixian Bai Liyun Wu Hao Cheng Liyuan Wang 
the Central Publicinterest Scientific Institution Basal Research Fund(1610212020002);the Major Project of Agricultural Science and Technology in Breeding of Tea Plant Variety in Zhejiang Province(2021C02067);Earmarked Fund for China Agriculture Research System(CARS-19).
Albino tea,a type of tea closely associated with the chlorophyll-deficient phenotype is of great interest due to its multiple benefits to human health.To explore the potential mechanisms involved in albino tea,we perf...
关键词：ANALYSIS ANALYSIS INTEGRATIVE 
Time-resolved and multi-tissue RNAseq provides new insights on the immune responses of European eels following infection with Aeromonas hydrophila被引量：1
《Water Biology and Security》2022年第1期20-33,共14页Fan Xiong Lu Cao Jing Xiong Ya Fang Wu Wen Shu Huang Ming Xian Chang 
supported by National Natural Science Foundation of China(31672687 and 31873046);Natural Science Foundation of Fujian Province(2018J01452).
No studies have systematically compared time-resolved and multi-tissue innate immune responses for European eels(Anguilla anguilla)with Aeromonas hydrophila infection by a high throughput method.Here,we challenged Eur...
关键词：TRANSCRIPTOMICS IMMUNOLOGY Anguilla Anguilla Aeromonas hydrophila 
Genes for RNA-binding proteins involved in neuralspecific functions and diseases are downregulated in Rubinstein-Taybi iNeurons被引量：2
《Neural Regeneration Research》2022年第1期5-14,共10页Lidia Larizza Luciano Calzari Valentina Alari Silvia Russo 
This work was supported by Italian Ministery of Health RC 08C921 to LL,Istituto Auxologico Italiano,IRCCs.
Taking advantage of the fast-growing knowledge of RNA-binding proteins(RBPs)we review the signature of downregulated genes for RBPs in the transcriptome of induced pluripotent stem cell neurons(iNeurons)modelling the ...
关键词：alternative splicing CBP/p300 chromatin regulators downregulated genes induced pluripotent stem cell-neurons neurodevelopmental disorders ribosome biogenesis RNA-binding proteins RNASEQ Rubinstein-Taybi 
From bulk, single-cell to spatial RNA sequencing被引量：18
《International Journal of Oral Science》2021年第4期339-344,共6页Xinmin Li Cun-Yu Wang 
This work was supported by NIH/NIDCR grants R01DE029173 and R01DE030445 and NIH/NCI grant R01CA236878.
RNA sequencing(RNAseq)can reveal gene fusions,splicing variants,mutations/indels in addition to differential gene expression,thus providing a more complete genetic picture than DNA sequencing.This most widely used tec...
关键词：representing RNASEQ spatially 
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