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Integrated genome-wide differentiation and association analyses identify causal genes underlying breeding-selected grain quality traits in japonica rice被引量：1
《Molecular Plant》2023年第9期1460-1477,共18页Hideki Yoshida Satoshi Okada Fanmiao Wang Shohei Shiota Masaki Mori Mayuko Kawamura Xue Zhao Yiqiao Wang Naho Nishigaki Asako Kobayashi Kotaro Miura Shinya Yoshida Masaru Ikegami Akitoshi Ito Lin-Tzu Huang Yue-le Caroline Hsing Yoshiyuki Yamagata Yoichi Morinaka Masanori Yamasaki Toshihisa Kotake Eiji Yamamoto Jian Sun Ko Hirano Makoto Matsuoka 
Improving grain quality is a primary objective in contemporary rice breeding.Japanese modern rice breeding has developed two different types of rice,eating and sake-brewing rice,with different grain characteristics,in...
关键词：rice grain quality sake brewing MANNAN genomic analysis 
Inferring the genome-wide history of grasses
《Molecular Plant》2022年第4期591-592,共2页Matheus E.Bianconi Pascal-Antoine Christin Luke T.Dunning 
P.A.C.is funded by a Royal Society University Research Fellowship(grant URRR\180022);L.T.D.is funded by an NERC Independant Research Fellowship(grant NE/T011025/1).
Establishing the relationships among organisms is fundamental to numerous fields in biology,including systematics,evolutionary biology,and epidemiology.These relationships are represented via phylogenetic trees,which ...
关键词：SIMULTANEOUS REVEALING EVOLUTIONARY 
The landscape of gene-CDS-haplotype diversity in rice:Properties,population organization,footprints of domestication and breeding,and implications for genetic improvement被引量：17
《Molecular Plant》2021年第5期787-804,共18页Fan Zhang Chunchao Wang Min Li Yanru Cui Yingyao Shi Zhichao Wu Zhiqiang Hu Wensheng Wang Jianlong Xu Zhikang Li 
funded by the National Key Research and Development Program of China(2016YFD0100301);the National Natural Science Foundation of China(31771762);the Agricultural Science,and Technology Innovation Program and the Cooperation and Innovation Mission(CAAS-ZD>CT202001);the Talent Introduction Program(RC311901)of Anhui Agricultural University.
Polymorphisms within gene coding regions represent the most important part of the overall genetic diversity of rice.We characterized the gene-coding sequence-haplotype(gcHap)diversity of 45963 rice genes in 3010 rice ...
关键词：gene-CDS-haplotype diversity functional alleles genome-wide selection signals evolution 
Genome-wide identification of agronomically important genes in outcrossing crops using OutcrossSeq被引量：9
《Molecular Plant》2021年第4期556-570,共15页Mengjiao Chen Weijuan Fan Feiyang Ji Hua Hua Jie Liu Mengxiao Yan Qingguo Ma Jiongjiong Fan Qin Wang Shufeng Zhang Guiling Liu Zhe Sun Changgeng Tian Fengling Zhao Jianli Zheng Qi Zhang Jiaxin Chen Jie Qiu Xin Wei Ziru Chen Peng Zhang Dong Pei Jun Yang Xuehui Huang 
We are grateful to Prof.Lars M.Steinmetz for the Tn5 plasmid.This work was funded by the Ministry of Science and Technology of China(2016YFD0100902 to X.H.,2018YFD1000701 and 2019YFD1000703 to J.Y.);the National Natural Science Foundation of China(31825015 to X.H.);the Program of Shanghai Academic Research Leader(18XD1402900 to X.H.);the Innovation Program of the Shanghai Municipal Education Commission(2017-01-07-00-02-E00039 to X.H.);the Shanghai Municipal Afforestation&City Appearance and Environmental Sanitation Administration(G182402,G192413,G192414,and G202402 to J.Y.);the Youth Innovation Promotion Association CAS(to J.Y.);the State Key Laboratory of Tree Genetics and Breeding support Program(CAFYBB2019ZY001 to D.P.).
Many important crops(e.g.,tuber,root,and tree crops)are cross-pollinating.For these crops,no inbred lines are available for genetic study and breeding because they are self-incompatible,clonally propagated,or have a l...
关键词：GENOTYPING genetic mapping OUTCROSSING POLYPLOID 
Rice Protein Tagging Project:A Call for International Collaborations on Genome-wide In-Locus Tagging of Rice Proteins被引量：4
《Molecular Plant》2020年第12期1663-1665,共3页Yuming Lu Pamela C.Ronald Bin Han Jiayang Li Jian-Kang Zhu 
the Chinese Academy of Sciences(to J.-K.Z.);the U.S.National Science Foundation Plant Genome Research Program,award no.2027795(to P.C.R.).
In September 1997,the International Rice Genome Sequencing Project was launched.This initiative pooled the resources of ten nations to obtain the first complete rice genome sequence,and promoted rice research and bree...
关键词：BREEDING GENOME ENDOGENOUS 
Genome-wide Dissection of Co-selected UV-B Responsive Pathways in the UV-B Adaptation of Qingke被引量：16
《Molecular Plant》2020年第1期112-127,共16页Xingquan Zeng Hongjun Yuan Xuekui Dong Meng Peng Xinyu Jing Qijun Xu Tang Tang Yulin Wang Sang Zha Meng Gao Congzhi Li Chujin Shu Zexiu Wei Wangmu Qimei Yuzhen Basang Jiabu Dunzhu Zeqing Li Lijun Bai Jian Shi Zhigang Zheng Sibin Yu Alisdair R.Fernie Jie Luo Tashi Nyima 
This research was supported by the following funding sources:the Tibet Autonomous Region Financial Special Fund 2015CZZX001,2014CZZXQ01,2015ZX001,2017CZZX001/2,and XZNKY-2018-C-021,and the National Key Research Project Fund,China 2018YFD100070 and 2018YFD1000703.
Qingke (Tibetan hulless barley) has long been cultivated and exposed to long-term and strong UV-B radiation on the Tibetan Plateau, which renders it an ideal species for elucidating novel UV-B responsive mechanisms in...
关键词：Tibetan hulless BARLEY UV-B radiation constitutive and induced accumulation PHENYLPROPANOID MYB transcription factor 
Folate Metabolism Interferes with Plant Immunity through 1C Methionine Synthase-Directed Genome-wide DNA Methylation Enhancement被引量：3
《Molecular Plant》2019年第9期1227-1242,共16页Beatriz Gonzalez Pablo Vera 
Plants rely on primary metabolism for flexible adaptation to environmental changes.Here,through a combination of chemical genetics and forward genetic studies in Arabidopsis plants,we identified that the essential fol...
关键词：folate PATHWAY plant IMMUNITY METHIONINE DNA METHYLATION 
Construction of a Genome-Wide Mutant Library in Rice Using CRISPR/Cas9被引量：56
《Molecular Plant》2017年第9期1238-1241,共4页Meng, Xiangbing Yu, Hong Zhang, Yi Zhuang, Fengfeng Song, Xiaoguang Gao, Songsong Gao, Caixia Li, Jiayang 
Dear Editor Rice （Oryza sativa L.） is one of the world＇s most important staple crops and a powerful model system for studying monocot spe- cies because of its relatively small genome, rich genomic re- sources, and ...
Genome-wide Targeted Mutagenesis in Rice Using the CRISPR/Cas9 System被引量：50
《Molecular Plant》2017年第9期1242-1245,共4页Lu, Yuming Ye, Xiao Guo, Renming Huang, Jing Wang, Wei Tang, Jiuyou Tan, Longtao Zhu, Jian-kang Chu, Chengcai Qian, Yangwen 
Dear Editor Since the completion of the rice （Oryza sativa） genome- sequencing project, a major goal of rice research has been the functional characterization of all annotated genetic loci in various biological proc...
Genome-wide Nucleosome Occupancy and Organization Modulates the Plasticity of Gene Transcriptional Status in Maize被引量：1
《Molecular Plant》2017年第7期962-974,共13页Jian Chen En Li Xiangbo Zhang Xiaomei Dong Lei Lei Weibin Song Haiming Zhao Jinsheng Lai 
This research is supported by the National Natural Science Foundation of China （91435206; 31421005）, and the 948 project （2016-X33） to J.L.
Nucleosomes are fundamental units of chromatin that play critical roles in gene regulation by modulating DNA accessibility. However, their roles in regulating tissue-specific gene transcription are poorly understood. ...
关键词：NUCLEOSOME Gene transcription PLASTICITY MAIZE 
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