CHROMATIN

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The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA被引量：1
《Molecular Plant》2022年第5期840-856,共17页Thomas Roulé Aurelie Christ Nosheen Hussain Ying Huang Caroline Hartmann Moussa Benhamed Jose Gutierrez-Marcos Federico Ariel Martin Crespi Thomas Blein 
supported by a BBSRC grant(BB/L016966/1)to J.G.-M.and Saclay Plant Sciences-SPS(ANR-17-EUR-0007)and CNRS(Labora-toire International Associe NOCOSYM)to M.C.and F.A..T.R.was awarded a PhD scholarship from the French“Ministere de I'Enseignement superieur,de la Recherche et de I'nnovation.”。
Clustered organization of biosynthetic non-homologous genes is emerging as a characteristic feature of plant genomes.The co-regulation of clustered genes seems to largely depend on epigenetic reprogram-ming and three-...
关键词：lncRNA ENHANCER CLUSTER chromatin conformation LHP1 ABA seed germination EPIGENETICS marneral 
Looping by RNA: Dynamic control of the chromatin loop by long non-coding RNAs in plants
《Molecular Plant》2021年第9期1430-1432,共3页Junghyun Kim Sibum Sung 
We acknowledge supports from NIH(R01GM100108)and NSF(IOS1656764)to S.S.
In eukaryotes,the three-dimensional(3D)structure of the genome plays a critical role in the transcriptional regulation.Even though the 3D structure of the genome is mainly determined by DNA and protein components,incr...
关键词：POTENTIAL HARBOR 
An inferred functional impact map of genetic variants in rice被引量：14
《Molecular Plant》2021年第9期1584-1599,共16页Hu Zhao Jiacheng Li Ling Yang Gang Qin Chunjiao Xia Xingbing Xu Yangmeng Su Yinmeng Liu Luchang Ming Ling-Ung Chen Lizhong Xiong Weibo Xie 
This work was supported by grants from the National Key Research and Development Program of China(2016YFD0100803);the National Natural Science Foundation of China(31821005,31922065,31771755);the State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources(SKLCUSA-b202002).
Interpreting the functional impacts of genetic variants(GVs)is an important challenge for functional genomic studies in crops and next-generation breeding.Previous studies in rice(Oryza sativa)have focused mainly on t...
关键词：ricegenetic variantschromatin accessibilityfunctional impact mapdeep learning 
HASTY moves to chromatin for miRNA production
《Molecular Plant》2021年第3期364-365,共2页Di Sun Xiuren Zhang 
The work by the Zhang laboratory was supported by a grant from NIH(GM132401)to X.Z.No conflict of interest declared。
MicroRNAs(miRNAs)have been well appreciated for their critical roles in regulating various biological processes in eukaryotes since the initial discovery of these tiny molecules in 1990s.The factory for miRNAs is loca...
关键词：al. EXPORT PROMPT 
Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the singlecell level被引量：25
《Molecular Plant》2021年第3期372-383,共12页Andrew Farmer Sandra Thibivilliers Kook Hui Ryu John Schiefelbein Marc Libault 
This work was supported by a grant to M.L.from the U.S.National Science Foundation(IOS#1339194 and 1854326);by grants to J.S.from the U.S.National Science Foundation(IOS#1923589);the Department of Energy(DE-SC0020358);by the Center for Plant Science Innovation,and by the Department of Agronomy and Horticulture at the University of Nebraska-Lincoln.
Similar to other complex organisms,plants consist of diverse and specialized cell types.The gain of unique biological functions of these different cell types is the consequence of the establishment of cell-typespecifi...
关键词：single-cell RNA-seq single-nucleus ATAC-seq Arabidopsis root 
Global Co-transcriptional Splicing in Arabidopsis and the Correlation with Splicing Regulation in Mature RNAs
《Molecular Plant》2020年第2期266-277,共12页Shaofang Li Yuan Wang Yonghui Zhao Xinjie Zhao Xuemei Chen Zhizhong Gong 
supported by the Fundamental Research Funds for the Central Universities,China and National Science Foundation of China(91740202).Y.W.was supported by a fellowship from Shenzhen Un iversity.
RNA splicing and spliceosome assembly in eukaryotes occur mainly during transcription.However,co-transcriptional splicing has not yet been explored in plants.Here,we built transcriptomes of nascent chromatin RNAs in A...
关键词：CHROMATIN co-transcriptional SPLICING frans-acting proteins ARABIDOPSIS 
The Features and Regulation of Co-transcriptional Splicing in Arabidopsis被引量：2
《Molecular Plant》2020年第2期278-294,共17页Danling Zhu Fei Mao Yuanchun Tian Xiaoya Lin Lianfeng Gu Hongya Gu Li-jia Qu Yufeng Wu Zhe Wu 
supported by Guangdong Innovative and Entrepreneurial Research Team Program(2016ZT06S172);the Shenzhen Sci-Tech Fund No.KYTDPT20181011104005;the National Natural Science Foundation of China(31771365 to Z.W.and 31800268 to D.Z.).
Precursor mRNA(pre-mRNA)splicing is essential for gene expression in most eukaryotic organisms.Previous studies from mammals,Drosophila,and yeast show that the majority of splicing events occurs co-transcriptionally.I...
关键词：co-transcriptional SPLICING CB-RNA-seq eClip-seq RNA binding protein CHROMATIN TRANSCRIPTION 
Local Changes in Chromatin Accessibility and Transcriptional Networks Underlying the Nitrate Response in Arabidopsis Roots被引量：1
《Molecular Plant》2019年第12期1545-1560,共16页Jose M.Alvarez Tomas C.Moyano Tao Zhang Diana E.Gras Francisco J.Herrera Viviana Araus Jose AQ'Brien Laura Carrillo Joaquin Medina Jesus Vicente-Carbajosa Jiming Jiang Rodrigo A.Gutierrez 
This work is funded by Institute Milenio iBio-Iniciativa Cientifica Milenio MINECON,Chile;by grants from the Fondo de Desarrollo de Areas Prioritarias(FONDAP)Center for Genome Regulation(15090007),Chile;Fondo Nacional de Desarrollo Cientifico y Tecnologico(FONDECYT)(1180759),Chile;to R.A.G.J.M.A.is supported by postdoctoral grant FONDECYT(3140336),Chile.J.J.is funded by grant MCB-1412948 from the National Science Foundation,United States;and J.M.by funding from the Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria(INIA),Spain(RTA2015-00014-c02-01).We also want to acknowledge the"Severo Ochoa Program for Centers of Excellence in R&DM from the Agenda Estatal de Investigacion of Spain(SEV-2016-0672(2017-2021))for supporting the scientific services used in this work.
Transcriptional regulation,determined by the chromatin structure and regulatory elements interacting at pro-moter regions,is a key step in plant responses to environmental cues.Nitrate(NO3-)is a nutrient signal that r...
关键词：NITRATE TRANSCRIPTIONAL regulation FOOTPRINTING RNA polymeraseⅡ regulatory networks 
A Dynamic Signaling Path to Chromatin-Level Control of Plant Drought Response
《Molecular Plant》2019年第3期292-294,共3页Clara Bourbousse Fredy Barneche 
As sessile organisms, plants display a high capacity for phenotypic adaptations allowing them to meet the constraints of a changing local environment. This plasticity notably originates from the aptitude of plants to ...
关键词：Dynamic SIGNALING PATH Chromatin-Level Control 
Brassinosteroid Signaling Recruits Histone 3 Lysine-27 Demethylation Activity to FLOWERING LOCUS C Chromatin to Inhibit the Floral Transition in Arabidopsis被引量：9
《Molecular Plant》2018年第9期1135-1146,共12页Zicong Li Yang Ou Zhicheng Zhang Jianming Li Yuehui He 
This work was supported in part by funding from the National Natural Science Foundation of China （grant number 31721001）, the National Key Research and Development Program of China （2017YFA0503803）, and the Chinese Academy of Sciences （XDPB0404）.
The steroid hormone brassinosteroid （BR） plays a broad role in plant growth and development. As the retarded growth in BR-insensitive and BR-deficient mutants causes a strong delay in days to flowering, BR signaling...
关键词：BRASSINOSTEROID BR signaling flowering time BZR1 Polycomb silencing FLOWERING LOCUS C 
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